C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: small nuclear ribonucleoprotein polypeptide B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000125870 SNRPB2 9606 + 20:16729961-16742563 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000246071 SNRPB2-001 16729984-16742563 protein_coding
  ENST00000377943 SNRPB2-002 16729961-16741776 protein_coding
  ENST00000478522 SNRPB2-003 16730029-16732468 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000246071ENST00000377943ENST00000478522
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000246071 N/A N/A 0.271±0.00 0.885±0.00 N/A N/A 0.252±0.00 N/A 0.781±0.00 N/A 0.814±0.00 N/A N/A N/A
ENST00000377943 11.011±0.00 9.276±0.00 1.848±0.00 7.941±5.38 9.189±2.82 4.781±2.88 6.135±0.00 3.643±0.17 1.669±0.19 2.077±0.01 3.500±2.72 10.185±5.44 6.102±2.03 13.068±7.11
ENST00000478522 5.150±0.00 N/A 2.475±0.00 7.081±0.00 6.340±0.00 3.049±0.00 3.484±0.07 4.903±0.00 4.374±0.00 4.721±0.00 3.155±1.36 8.741±0.81 6.911±1.04 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002DH CIL_0002DH_0001 CGP 20:16729961-16770062

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000398 IC mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005681 IDA spliceosomal complex
GO:0005686 TAS U2 snRNP
GO:0005730 IDA nucleolus
GO:0006397 TAS mRNA processing
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0017069 IEA snRNA binding
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000039424 snrpb2 small nuclear ribonucleoprotein polypeptide B2 protein_coding Danio_rerio
ENSMUSG00000008333 Snrpb2 U2 small nuclear ribonucleoprotein B protein_coding Mus_musculus

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