C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002DH_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000125870-ENSG00000125879 CGP 9606 20:16729961-16770062
GeneTranscriptPositionBiotype
ENSG00000125870 (SNRPB2)
small nuclear ribonucleoprotein polypeptide B 		ENST00000246071 (SNRPB2-001) 16729984-16742563 protein_coding
ENST00000377943 (SNRPB2-002) 16729961-16741776 protein_coding
ENST00000478522 (SNRPB2-003) 16730029-16732468 processed_transcript
ENSG00000125879 (OTOR)
otoraplin 		ENST00000246081 (OTOR-001) 16748358-16752164 protein_coding
ENST00000486129 (OTOR-002) 16749360-16751782 processed_transcript
ENST00000490148 (OTOR-003) 16749374-16770062 processed_transcript
ENSG00000228809 (RP4-705D16.3)
 ENST00000425939 (RP4-705D16.3-001) 16714844-16730948 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_0002DH_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000008333-ENSMUSG00000027416 CGP 10090 2:143063039-143081713
GeneTranscriptPositionBiotype
ENSMUSG00000008333 (Snrpb2)
U2 small nuclear ribonucleoprotein B 		ENSMUST00000008477 (Snrpb2-001) 143063039-143072853 protein_coding
ENSMUST00000126763 (Snrpb2-004) 143063131-143069424 protein_coding
ENSMUST00000127760 (Snrpb2-005) 143064402-143069424 retained_intron
ENSMUST00000134091 (Snrpb2-003) 143068173-143072853 retained_intron
ENSMUST00000139114 (Snrpb2-002) 143063061-143065734 retained_intron
ENSMUSG00000027416 (Otor)
otoraplin 		ENSMUST00000028902 (Otor-001) 143078473-143081713 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002DH_0001ENSG00000125870ENST00000246071ENST00000377943ENST00000478522ENSG00000125879ENST00000246081ENST00000486129ENST00000490148ENSG00000228809ENST00000425939CIL_0002DH_0002ENSMUSG00000008333ENSMUST00000008477ENSMUST00000126763ENSMUST00000127760ENSMUST00000134091ENSMUST00000139114ENSMUSG00000027416ENSMUST00000028902
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002DH_0001ENSG00000125870ENST00000246071ENST00000377943ENST00000478522ENSG00000125879ENST00000246081ENST00000486129ENST00000490148ENSG00000228809ENST00000425939CIL_0002DH_0002ENSMUSG00000008333ENSMUST00000008477ENSMUST00000126763ENSMUST00000127760ENSMUST00000134091ENSMUST00000139114ENSMUSG00000027416ENSMUST00000028902
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000125870 ENST00000246071 N/A N/A 0.271±0.00 0.885±0.00 N/A N/A 0.252±0.00 N/A 0.781±0.00 N/A 0.814±0.00 N/A N/A N/A
ENST00000377943 11.011±0.00 9.276±0.00 1.848±0.00 7.941±5.38 9.189±2.82 4.781±2.88 6.135±0.00 3.643±0.17 1.669±0.19 2.077±0.01 3.500±2.72 10.185±5.44 6.102±2.03 13.068±7.11
ENST00000478522 5.150±0.00 N/A 2.475±0.00 7.081±0.00 6.340±0.00 3.049±0.00 3.484±0.07 4.903±0.00 4.374±0.00 4.721±0.00 3.155±1.36 8.741±0.81 6.911±1.04 N/A
ENSG00000125879 ENST00000246081 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.015±0.00 N/A N/A
ENST00000486129 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.029±0.00 0.049±0.00 N/A
ENST00000490148 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.068±0.00
ENSG00000228809 ENST00000425939 0.014±0.00 0.056±0.00 N/A 0.155±0.00 0.081±0.03 0.013±0.00 0.040±0.00 N/A 0.012±0.00 0.168±0.12 N/A N/A N/A 0.029±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000008333 ENSMUST00000008477 3.309±1.75 N/A 7.382±1.43 10.697±3.87 2.160±0.79 1.308±0.75 2.335±0.19 2.713±0.69 6.827±6.25 2.914±0.71 2.282±0.32 8.046±7.36 14.566±7.10 4.815±1.73
ENSMUST00000126763 N/A N/A N/A N/A N/A N/A N/A N/A 0.639±0.00 N/A N/A N/A N/A N/A
ENSMUST00000127760 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 22.301±4.15 15.467±5.18 N/A
ENSMUST00000134091 1.050±0.00 1.307±0.57 N/A 1.078±0.00 1.522±0.21 1.277±0.38 N/A 0.736±0.00 0.702±0.00 0.637±0.00 N/A 2.664±0.92 N/A N/A
ENSMUST00000139114 N/A N/A N/A N/A N/A N/A N/A 1.735±0.00 0.555±0.00 1.725±0.00 N/A 1.488±0.67 N/A N/A
ENSMUSG00000027416 ENSMUST00000028902 0.103±0.04 N/A 0.009±0.00 0.226±0.14 N/A 0.134±0.00 N/A N/A 0.028±0.02 N/A 0.051±0.00 0.680±0.30 0.012±0.00 N/A

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