C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: U2 small nuclear ribonucleoprotein B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000008477 Snrpb2-001 ENSMUSG00000008333 10090 + 2:143063039-143072853 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000008477
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000008477 3.309±1.75 7.382±1.43 10.697±3.87 2.160±0.79 1.308±0.75 2.335±0.19 2.713±0.69 6.827±6.25 2.914±0.71 2.282±0.32 8.046±7.36 14.566±7.10 4.815±1.73

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002DH CIL_0002DH_0002 CGP 2:143063039-143081713

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000398 IEA mRNA splicing, via spliceosome
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005681 IEA spliceosomal complex
GO:0005730 IEA nucleolus
GO:0017069 IEA snRNA binding
GO:0071013 IEA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000012018 snrpa-201 protein_coding Danio_rerio 6e-33 147
ENST00000246071 SNRPB2-001 protein_coding Homo_sapiens 0 946
ENST00000377943 SNRPB2-002 protein_coding Homo_sapiens 0 946
ENST00000407763 RP11-365H23.1-001 processed_pseudogene Homo_sapiens 0 713
ENST00000478522 SNRPB2-003 processed_transcript Homo_sapiens 0 359

Loading