C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal protein S18
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000008668 Rps18 10090 - 17:33951999-33956001 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000008812 Rps18-001 33951999-33955717 protein_coding
  ENSMUST00000172550 Rps18-007 33955519-33956001 processed_transcript
  ENSMUST00000172799 Rps18-002 33952000-33954490 processed_transcript
  ENSMUST00000173323 Rps18-013 33952004-33952541 retained_intron
  ENSMUST00000174175 Rps18-005 33952000-33955660 retained_intron
  ENSMUST00000174609 Rps18-006 33951999-33955663 protein_coding
  ENSMUST00000174620 Rps18-012 33952269-33955653 retained_intron
  ENSMUST00000174662 Rps18-003 33954825-33955660 retained_intron
  ENSMUST00000174745 Rps18-011 33951999-33955212 processed_transcript
  ENSMUST00000174758 Rps18-008 33951999-33952689 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000008812ENSMUST00000174745
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000008812 227.530±53.82 93.808±18.08 353.755±46.90 203.749±78.01 131.728±35.18 220.209±42.12 66.985±16.40 147.512±16.95 419.478±349.30 133.087±11.61 241.656±77.18 357.264±57.70 346.882±98.26 83.171±16.74
ENSMUST00000174745 N/A N/A N/A 189.413±0.00 N/A N/A N/A N/A N/A N/A N/A 997.601±0.00 368.750±236.20 169.521±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007AA CIL_0007AA_0002 CGP 17:33951999-33966984

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0003735 IBA structural constituent of ribosome
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005829 IBA cytosol
GO:0005925 IEA focal adhesion
GO:0006412 IBA translation
GO:0015935 IBA small ribosomal subunit
GO:0016020 IEA membrane
GO:0019843 IEA rRNA binding
GO:0022627 IEA cytosolic small ribosomal subunit
GO:0042254 IBA ribosome biogenesis
GO:0044822 IEA poly(A) RNA binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000020153 rps18 ribosomal protein S18 protein_coding Danio_rerio
ENSG00000231500 RPS18 ribosomal protein S18 protein_coding Homo_sapiens

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