C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S18
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000008812 Rps18-001 ENSMUSG00000008668 10090 - 17:33951999-33955717 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000008812
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000008812 227.530±53.82 93.808±18.08 353.755±46.90 203.749±78.01 131.728±35.18 220.209±42.12 66.985±16.40 147.512±16.95 419.478±349.30 133.087±11.61 241.656±77.18 357.264±57.70 346.882±98.26 83.171±16.74

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007AA CIL_0007AA_0002 CGP 17:33951999-33966984

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IBA structural constituent of ribosome
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005829 IBA cytosol
GO:0005925 IEA focal adhesion
GO:0006412 IBA translation
GO:0015935 IBA small ribosomal subunit
GO:0016020 IEA membrane
GO:0019843 IEA rRNA binding
GO:0022627 IEA cytosolic small ribosomal subunit
GO:0042254 IBA ribosome biogenesis
GO:0044822 IEA poly(A) RNA binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000017975 rps18-001 protein_coding Danio_rerio 0 348
ENSDART00000143134 rps18-003 protein_coding Danio_rerio 0 344
ENSDART00000142769 rps18-002 protein_coding Danio_rerio 0 342
ENSDART00000131839 rps18-005 protein_coding Danio_rerio 0 244
ENSDART00000134350 rps18-004 retained_intron Danio_rerio 0 243
ENST00000211372 RPS18-001 protein_coding Homo_sapiens 0 802
ENST00000404109 RP11-428J1.2-001 processed_pseudogene Homo_sapiens 0 270
ENST00000412454 RPS18P12-001 processed_pseudogene Homo_sapiens 0 584
ENST00000434122 RPS18-001 protein_coding Homo_sapiens 0 802
ENST00000439602 RPS18-001 protein_coding Homo_sapiens 0 802
ENST00000440980 RPS18-001 protein_coding Homo_sapiens 0 279
ENST00000454021 RPS18-001 protein_coding Homo_sapiens 0 802
ENST00000457341 RPS18-001 protein_coding Homo_sapiens 0 802
ENST00000459882 RPS18-002 processed_transcript Homo_sapiens 0 691
ENST00000461584 RPS18-005 retained_intron Homo_sapiens 0 691
ENST00000461925 RPS18-008 retained_intron Homo_sapiens 0 399
ENST00000463232 RPS18-005 retained_intron Homo_sapiens 0 691
ENST00000463901 RPS18-008 retained_intron Homo_sapiens 0 399
ENST00000464447 RPS18-007 retained_intron Homo_sapiens 0 558
ENST00000464602 RPS18-004 retained_intron Homo_sapiens 0 278
ENST00000470276 RPS18-003 processed_transcript Homo_sapiens 0 529
ENST00000470852 RPS18-005 retained_intron Homo_sapiens 0 691
ENST00000472218 RPS18-004 retained_intron Homo_sapiens 0 278
ENST00000472979 RPS18-007 retained_intron Homo_sapiens 0 558
ENST00000473242 RPS18-006 retained_intron Homo_sapiens 0 479
ENST00000473705 RPS18-005 retained_intron Homo_sapiens 4.00001e-40 169
ENST00000474626 RPS18-006 retained_intron Homo_sapiens 0 479
ENST00000474973 RPS18-002 protein_coding Homo_sapiens 0 691
ENST00000475634 RPS18-005 retained_intron Homo_sapiens 0 691
ENST00000476222 RPS18-003 processed_transcript Homo_sapiens 0 529
ENST00000476288 RPS18-003 protein_coding Homo_sapiens 0 529
ENST00000476337 RPS18-002 processed_transcript Homo_sapiens 0 691
ENST00000476880 RPS18P6-001 processed_pseudogene Homo_sapiens 0 339
ENST00000477055 RPS18-002 protein_coding Homo_sapiens 0 691
ENST00000477273 RPS18-006 retained_intron Homo_sapiens 0 479
ENST00000477733 RPS18-008 retained_intron Homo_sapiens 0 399
ENST00000477787 RPS18-007 retained_intron Homo_sapiens 0 558
ENST00000479802 RPS18-008 retained_intron Homo_sapiens 0 399
ENST00000481330 RPS18-006 retained_intron Homo_sapiens 0 479
ENST00000482391 RPS18-007 retained_intron Homo_sapiens 0 558
ENST00000482698 RPS18-004 retained_intron Homo_sapiens 0 278
ENST00000482817 RPS18P9-001 processed_pseudogene Homo_sapiens 0 525
ENST00000484321 RPS18-003 protein_coding Homo_sapiens 0 529
ENST00000485674 RPS18-004 retained_intron Homo_sapiens 0 278
ENST00000486781 RPS18-002 protein_coding Homo_sapiens 0 691
ENST00000487970 RPS18-008 retained_intron Homo_sapiens 0 399
ENST00000489474 RPS18-004 retained_intron Homo_sapiens 0 278
ENST00000490191 RPS18-005 retained_intron Homo_sapiens 0 691
ENST00000490380 RPS18-006 retained_intron Homo_sapiens 0 479
ENST00000494232 RPS18-003 protein_coding Homo_sapiens 0 529
ENST00000495909 CTD-2061E19.1-001 processed_pseudogene Homo_sapiens 0 468
ENST00000496294 RP11-234A1.1-001 processed_pseudogene Homo_sapiens 0 606
ENST00000496813 RPS18-007 retained_intron Homo_sapiens 0 558
ENST00000497078 RPS18-002 processed_transcript Homo_sapiens 9.99995e-41 169

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