C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: limb and neural patterns
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000009207 Lnp 10090 - 2:74520291-74579435 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000064503 Lnp-001 74520334-74578948 protein_coding
  ENSMUST00000102676 Lnp-004 74522040-74578223 protein_coding
  ENSMUST00000111993 Lnp-013 74520291-74578948 protein_coding
  ENSMUST00000127168 Lnp-005 74520341-74533106 processed_transcript
  ENSMUST00000130232 Lnp-009 74537406-74578517 protein_coding
  ENSMUST00000130586 Lnp-012 74531909-74579379 protein_coding
  ENSMUST00000134168 Lnp-007 74569104-74578894 protein_coding
  ENSMUST00000134641 Lnp-002 74521333-74578931 processed_transcript
  ENSMUST00000134764 Lnp-006 74548024-74579435 processed_transcript
  ENSMUST00000145293 Lnp-008 74568839-74578880 processed_transcript
  ENSMUST00000145933 Lnp-010 74551075-74551894 processed_transcript
  ENSMUST00000154706 Lnp-003 74551368-74578916 processed_transcript
  ENSMUST00000155006 Lnp-011 74547398-74554996 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000064503ENSMUST00000102676ENSMUST00000111993ENSMUST00000130586ENSMUST00000134168ENSMUST00000134641ENSMUST00000134764ENSMUST00000154706
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000064503 1.046±0.00 3.542±1.07 1.551±0.00 1.111±0.00 0.609±0.00 N/A 0.326±0.08 1.755±0.80 1.002±0.00 2.073±1.45 1.543±0.42 N/A
ENSMUST00000102676 2.000±0.39 2.216±0.00 9.796±0.00 2.516±1.22 0.768±0.00 0.657±0.14 0.660±0.23 0.788±0.00 1.463±0.28 2.011±1.03 4.885±2.89 22.467±2.23
ENSMUST00000111993 N/A N/A N/A N/A N/A N/A N/A 0.586±0.00 N/A 1.243±0.00 0.586±0.00 N/A
ENSMUST00000130586 N/A 3.548±1.71 N/A 2.254±0.00 5.392±1.43 1.411±0.00 1.071±0.03 1.195±0.04 1.838±0.00 4.460±2.78 N/A N/A
ENSMUST00000134168 N/A 0.726±0.12 N/A 0.853±0.00 N/A N/A N/A N/A 1.318±0.00 0.520±0.00 N/A N/A
ENSMUST00000134641 1.309±0.65 1.996±0.77 N/A 2.186±0.37 2.820±0.41 1.312±0.08 0.762±0.27 2.350±1.70 2.295±0.76 1.575±0.57 2.771±0.71 6.199±0.99
ENSMUST00000134764 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 25.298±0.00
ENSMUST00000154706 0.741±0.00 N/A N/A 0.445±0.00 N/A N/A N/A N/A N/A 0.348±0.04 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007L2 CIL_0007L2_0002 UCNEbase 2:73834549-75665799
CIL_0001H5 CIL_0001H5_0002 CGP 2:73908447-74579435
CIL_00090A CIL_00090A_0002 VISTA 2:74189927-74791300
CIL_0008JZ CIL_0008JZ_0002 VISTA 2:74350860-74952235
CIL_0001H8 CIL_0001H8_0002 CGP 2:74520291-74659557

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005789 IEA endoplasmic reticulum membrane
GO:0007596 IMP blood coagulation
GO:0016021 IEA integral component of membrane
GO:0032330 IMP regulation of chondrocyte differentiation
GO:0035115 IMP embryonic forelimb morphogenesis
GO:0042733 IGI embryonic digit morphogenesis
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000006639 lnpb limb and neural patterns b protein_coding Danio_rerio
ENSDARG00000063646 lnpa limb and neural patterns a protein_coding Danio_rerio
ENSG00000144320 KIAA1715 KIAA1715 protein_coding Homo_sapiens

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