C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transportin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000109401 Tnpo1-001 ENSMUSG00000009470 10090 - 13:98839019-98926384 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000109401
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000109401 15.144±2.32 16.876±1.75 13.147±1.57 17.688±11.36 12.273±1.02 9.308±1.04 7.379±0.30 14.853±0.73 8.871±1.76 14.020±1.52 2.181±0.70 16.100±5.86 13.678±6.45 5.660±2.98

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007KX CIL_0007KX_0002 UCNEbase 13:98476724-98844627

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006886 IEA intracellular protein transport
GO:0008536 IEA Ran GTPase binding
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000051278 tnpo1-201 protein_coding Danio_rerio 0 1463
ENSDART00000062945 TNPO2 (2 of 2)-201 protein_coding Danio_rerio 0 754
ENST00000337273 TNPO1-001 protein_coding Homo_sapiens 0 6065
ENST00000423641 TNPO1P1-001 processed_pseudogene Homo_sapiens 0 1288
ENST00000426249 TNPO1P2-001 processed_pseudogene Homo_sapiens 0 2970
ENST00000436471 TNPO1P3-001 processed_pseudogene Homo_sapiens 0 3001
ENST00000503084 TNPO1-005 retained_intron Homo_sapiens 0 883
ENST00000505082 TNPO1-004 processed_transcript Homo_sapiens 0 601
ENST00000506351 TNPO1-006 protein_coding Homo_sapiens 0 4037
ENST00000506528 TNPO1-008 processed_transcript Homo_sapiens 0 488
ENST00000508762 TNPO1-003 processed_transcript Homo_sapiens 0 490
ENST00000509030 TNPO1-007 processed_transcript Homo_sapiens 0 619
ENST00000511754 TNPO1-009 processed_transcript Homo_sapiens 0 313
ENST00000513944 TNPO1-002 processed_transcript Homo_sapiens 0 429
ENST00000515483 TNPO1-010 processed_transcript Homo_sapiens 0 479
ENST00000518279 TNPO1-012 processed_transcript Homo_sapiens 0 294
ENST00000520850 TNPO1-011 nonsense_mediated_decay Homo_sapiens 0 643
ENST00000523768 TNPO1-013 protein_coding Homo_sapiens 0 3133
ENST00000605210 TNPO1-014 protein_coding Homo_sapiens 0 989

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