C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: calcium channel, voltage-dependent, alpha 2/delta subunit 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000010066 Cacna2d2 10090 + 9:107399612-107529346 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000010210 Cacna2d2-005 107399612-107529346 protein_coding
  ENSMUST00000085092 Cacna2d2-002 107399880-107528993 protein_coding
  ENSMUST00000164988 Cacna2d2-201 107399880-107529343 protein_coding
  ENSMUST00000166799 Cacna2d2-006 107400069-107527464 protein_coding
  ENSMUST00000168532 Cacna2d2-001 107399612-107529346 protein_coding
  ENSMUST00000168959 Cacna2d2-008 107526657-107527567 retained_intron
  ENSMUST00000169354 Cacna2d2-009 107505604-107513534 processed_transcript
  ENSMUST00000170737 Cacna2d2-003 107400069-107529346 protein_coding
  ENSMUST00000171809 Cacna2d2-007 107509280-107513896 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000010210ENSMUST00000085092ENSMUST00000166799ENSMUST00000168532ENSMUST00000168959ENSMUST00000169354ENSMUST00000170737
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000010210 N/A 0.306±0.00 N/A N/A N/A N/A N/A 0.052±0.01 N/A 0.042±0.00 0.076±0.02 0.220±0.00 0.054±0.00 N/A
ENSMUST00000085092 0.044±0.03 0.728±0.12 0.106±0.02 12.053±7.06 0.123±0.06 1.403±0.60 1.905±0.34 0.107±0.02 0.013±0.00 0.098±0.05 0.085±0.07 0.499±0.41 0.056±0.06 0.906±0.21
ENSMUST00000166799 N/A 0.562±0.00 N/A N/A 0.041±0.00 N/A N/A N/A N/A N/A 0.032±0.00 0.464±0.06 N/A N/A
ENSMUST00000168532 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.041±0.00 0.030±0.00 0.146±0.00 N/A N/A
ENSMUST00000168959 0.145±0.00 N/A N/A N/A 0.367±0.14 11.447±0.00 N/A N/A N/A 0.289±0.00 0.103±0.00 0.964±0.00 0.333±0.07 N/A
ENSMUST00000169354 N/A N/A N/A 29.738±0.00 N/A N/A N/A N/A N/A N/A N/A 1.447±0.00 N/A N/A
ENSMUST00000170737 N/A 1.214±0.30 0.074±0.04 8.287±0.36 0.104±0.00 1.455±0.73 1.161±0.18 0.077±0.03 0.013±0.01 0.061±0.03 0.064±0.01 0.327±0.13 N/A 0.399±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008D8 CIL_0008D8_0002 VISTA 9:107005935-107609958

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005245 IDA voltage-gated calcium channel activity
GO:0005891 IDA voltage-gated calcium channel complex
GO:0006816 IC calcium ion transport
GO:0007528 IMP neuromuscular junction development
GO:0034765 IEA regulation of ion transmembrane transport
GO:0040014 IMP regulation of multicellular organism growth
GO:0046622 IMP positive regulation of organ growth
GO:0046872 IEA metal ion binding
GO:0048747 IMP muscle fiber development
GO:0060024 IMP rhythmic synaptic transmission
GO:0070588 IEA calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000039182 cacna2d2 calcium channel, voltage-dependent, alpha 2/delta subunit 2 protein_coding Danio_rerio
ENSDARG00000078169 CACNA2D2 (2 of 3) calcium channel, voltage-dependent, alpha 2/delta subunit 2 protein_coding Danio_rerio
ENSDARG00000079540 CACNA2D2 (3 of 3) calcium channel, voltage-dependent, alpha 2/delta subunit 2 protein_coding Danio_rerio
ENSG00000007402 CACNA2D2 calcium channel, voltage-dependent, alpha 2/delta subunit 2 protein_coding Homo_sapiens

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