C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calcium channel, voltage-dependent, alpha 2/delta subunit 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000170737 Cacna2d2-003 ENSMUSG00000010066 10090 + 9:107400069-107529346 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENSMUST00000170737
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENSMUST00000170737 1.214±0.30 0.074±0.04 8.287±0.36 0.104±0.00 1.455±0.73 1.161±0.18 0.077±0.03 0.013±0.01 0.061±0.03 0.064±0.01 0.327±0.13 0.399±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008D8 CIL_0008D8_0002 VISTA 9:107005935-107609958

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005245 IDA voltage-gated calcium channel activity
GO:0005891 IDA voltage-gated calcium channel complex
GO:0006816 IC calcium ion transport
GO:0007528 IMP neuromuscular junction development
GO:0034765 IEA regulation of ion transmembrane transport
GO:0040014 IMP regulation of multicellular organism growth
GO:0046622 IMP positive regulation of organ growth
GO:0046872 IEA metal ion binding
GO:0048747 IMP muscle fiber development
GO:0060024 IMP rhythmic synaptic transmission
GO:0070588 IEA calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000057250 cacna2d2-201 protein_coding Danio_rerio 0 542
ENSDART00000127144 cacna2d2-202 protein_coding Danio_rerio 0 542
ENST00000266039 CACNA2D2-002 protein_coding Homo_sapiens 0 4623
ENST00000360963 CACNA2D2-003 protein_coding Homo_sapiens 0 4416
ENST00000423994 CACNA2D2-007 protein_coding Homo_sapiens 0 4545
ENST00000424201 CACNA2D2-001 protein_coding Homo_sapiens 0 4584
ENST00000429770 CACNA2D2-008 protein_coding Homo_sapiens 0 4602
ENST00000479441 CACNA2D2-005 protein_coding Homo_sapiens 0 4466
ENST00000483620 CACNA2D2-006 retained_intron Homo_sapiens 0 604
ENST00000487413 CACNA2D2-004 processed_transcript Homo_sapiens 0 473

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