C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Ras association (RalGDS/AF-6) domain family member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000010067 Rassf1 10090 + 9:107551555-107562263 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000010211 Rassf1-004 107554656-107562263 protein_coding
  ENSMUST00000093786 Rassf1-001 107551555-107562263 protein_coding
  ENSMUST00000121635 Rassf1-005 107556611-107562263 protein_coding
  ENSMUST00000122225 Rassf1-002 107551567-107562263 protein_coding
  ENSMUST00000125080 Rassf1-009 107551562-107554506 retained_intron
  ENSMUST00000125386 Rassf1-008 107557935-107561838 retained_intron
  ENSMUST00000129320 Rassf1-007 107557942-107560435 retained_intron
  ENSMUST00000144129 Rassf1-006 107556743-107562263 retained_intron
  ENSMUST00000156198 Rassf1-003 107551590-107562263 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderColonHeartLiverLungMuscleOvaryPlacentaTestisENSMUST00000010211ENSMUST00000093786
Transcript ID Adipose Bladder Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000010211 9.102±0.37 10.340±2.97 9.395±0.00 4.262±0.07 6.380±0.28 14.244±2.05 3.614±0.30 7.302±0.00 10.563±1.66 15.697±5.34
ENSMUST00000093786 N/A N/A N/A N/A N/A N/A N/A 11.502±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008D8 CIL_0008D8_0002 VISTA 9:107005935-107609958
CIL_00011B CIL_00011B_0002 CGP 9:107551555-107566108

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005737 IEA cytoplasm
GO:0005874 IEA microtubule
GO:0005886 IEA plasma membrane
GO:0006974 ISS cellular response to DNA damage stimulus
GO:0007050 ISS cell cycle arrest
GO:0007265 ISS Ras protein signal transduction
GO:0015630 ISS microtubule cytoskeleton
GO:0031398 ISS positive regulation of protein ubiquitination
GO:0035556 IEA intracellular signal transduction
GO:0042802 IEA identical protein binding
GO:0046872 IEA metal ion binding
GO:0047485 IEA protein N-terminus binding
GO:0050821 ISS protein stabilization
GO:0071157 ISS negative regulation of cell cycle arrest

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000004840 rassf1 Ras association (RalGDS/AF-6) domain family 1 protein_coding Danio_rerio
ENSG00000068028 RASSF1 Ras association (RalGDS/AF-6) domain family member 1 protein_coding Homo_sapiens

Loading