C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Ras association (RalGDS/AF-6) domain family member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000093786 Rassf1-001 ENSMUSG00000010067 10090 + 9:107551555-107562263 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryENSMUST00000093786
Transcript ID Ovary
ENSMUST00000093786 11.502±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008D8 CIL_0008D8_0002 VISTA 9:107005935-107609958
CIL_00011B CIL_00011B_0002 CGP 9:107551555-107566108

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005737 IEA cytoplasm
GO:0005874 IEA microtubule
GO:0005886 IEA plasma membrane
GO:0006974 ISS cellular response to DNA damage stimulus
GO:0007050 ISS cell cycle arrest
GO:0007265 ISS Ras protein signal transduction
GO:0015630 ISS microtubule cytoskeleton
GO:0031398 ISS positive regulation of protein ubiquitination
GO:0042802 IEA identical protein binding
GO:0046872 IEA metal ion binding
GO:0047485 IEA protein N-terminus binding
GO:0050821 ISS protein stabilization
GO:0071157 ISS negative regulation of cell cycle arrest

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000327761 RASSF1-007 protein_coding Homo_sapiens 0 815
ENST00000357043 RASSF1-002 protein_coding Homo_sapiens 0 1138
ENST00000359365 RASSF1-001 protein_coding Homo_sapiens 0 1194
ENST00000395117 RASSF1-004 nonsense_mediated_decay Homo_sapiens 0 813
ENST00000395126 RASSF1-005 protein_coding Homo_sapiens 0 935
ENST00000478619 RASSF1-011 retained_intron Homo_sapiens 0 385
ENST00000482447 RASSF1-003 nonsense_mediated_decay Homo_sapiens 0 680
ENST00000488024 RASSF1-010 processed_transcript Homo_sapiens 0 385
ENST00000616212 RASSF1-201 protein_coding Homo_sapiens 0 813

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