C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: all-trans retinoic acid induced differentiation factor
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000013622 Atraid 10090 + 5:31048312-31054633 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000013766 Atraid-001 31048635-31054633 protein_coding
  ENSMUST00000114659 Atraid-005 31048785-31054393 protein_coding
  ENSMUST00000114660 Atraid-002 31048659-31054618 nonsense_mediated_decay
  ENSMUST00000130250 Atraid-003 31048312-31052769 protein_coding
  ENSMUST00000133215 Atraid-007 31053870-31054623 processed_transcript
  ENSMUST00000138309 Atraid-004 31048321-31054617 retained_intron
  ENSMUST00000153643 Atraid-006 31048722-31054344 protein_coding
  ENSMUST00000173215 Atraid-008 31048648-31053993 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000013766ENSMUST00000114660ENSMUST00000138309ENSMUST00000153643ENSMUST00000173215
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000013766 102.893±10.90 96.219±3.53 67.583±6.83 44.132±8.63 80.720±2.26 60.176±4.07 38.376±5.18 157.574±4.12 67.545±32.10 69.450±7.86 31.004±5.05 68.258±7.89 70.887±25.06 22.547±3.57
ENSMUST00000114660 N/A N/A N/A N/A 44.948±0.00 N/A N/A N/A N/A N/A 7.622±0.53 15.891±0.00 N/A N/A
ENSMUST00000138309 N/A N/A N/A 7.791±2.46 N/A N/A N/A N/A N/A N/A 2.962±0.00 8.213±2.25 N/A N/A
ENSMUST00000153643 N/A N/A N/A 30.120±0.00 N/A N/A N/A N/A N/A N/A N/A 52.506±0.00 70.536±43.43 12.282±0.00
ENSMUST00000173215 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 47.464±5.30 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000EJ CIL_0000EJ_0002 CGP 5:30968677-31048924
CIL_0000EI CIL_0000EI_0002 CGP 5:31036036-31054633
CIL_0000EH CIL_0000EH_0002 CGP 5:31048312-31078479

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005635 ISS nuclear envelope
GO:0005886 IEA plasma membrane
GO:0008150 ND biological_process
GO:0010468 ISS regulation of gene expression
GO:0016021 IEA integral component of membrane
GO:0030154 IEA cell differentiation
GO:0030501 ISS positive regulation of bone mineralization
GO:0033689 ISS negative regulation of osteoblast proliferation
GO:0045669 ISS positive regulation of osteoblast differentiation
GO:0048471 ISS perinuclear region of cytoplasm
GO:2000599 ISS negative regulation of cyclin catabolic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000043388 atraid all-trans retinoic acid-induced differentiation factor protein_coding Danio_rerio
ENSG00000138085 ATRAID all-trans retinoic acid-induced differentiation factor protein_coding Homo_sapiens

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