C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: all-trans retinoic acid induced differentiation factor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000013766 Atraid-001 ENSMUSG00000013622 10090 + 5:31048635-31054633 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000013766
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000013766 102.893±10.90 96.219±3.53 67.583±6.83 44.132±8.63 80.720±2.26 60.176±4.07 38.376±5.18 157.574±4.12 67.545±32.10 69.450±7.86 31.004±5.05 68.258±7.89 70.887±25.06 22.547±3.57

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000EJ CIL_0000EJ_0002 CGP 5:30968677-31048924
CIL_0000EI CIL_0000EI_0002 CGP 5:31036036-31054633
CIL_0000EH CIL_0000EH_0002 CGP 5:31048312-31078479

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005635 ISS nuclear envelope
GO:0005886 IEA plasma membrane
GO:0008150 ND biological_process
GO:0010468 ISS regulation of gene expression
GO:0016021 IEA integral component of membrane
GO:0030154 IEA cell differentiation
GO:0030501 ISS positive regulation of bone mineralization
GO:0033689 ISS negative regulation of osteoblast proliferation
GO:0045669 ISS positive regulation of osteoblast differentiation
GO:0048471 ISS perinuclear region of cytoplasm
GO:2000599 ISS negative regulation of cyclin catabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000380171 ATRAID-001 protein_coding Homo_sapiens 0 627
ENST00000405489 ATRAID-002 protein_coding Homo_sapiens 0 566
ENST00000419744 ATRAID-003 protein_coding Homo_sapiens 0 261
ENST00000472515 ATRAID-005 retained_intron Homo_sapiens 0 272
ENST00000484646 ATRAID-006 retained_intron Homo_sapiens 1e-34 150
ENST00000491220 ATRAID-004 retained_intron Homo_sapiens 2e-28 128
ENST00000606999 ATRAID-007 protein_coding Homo_sapiens 0 627
ENST00000611786 ATRAID-201 protein_coding Homo_sapiens 0 627

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