C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tRNA nucleotidyl transferase, CCA-adding, 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000057578 Trnt1-001 ENSMUSG00000013736 10090 + 6:106769166-106782474 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000057578
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000057578 4.204±1.25 7.566±2.55 7.503±0.06 8.839±1.20 5.105±0.84 3.696±1.34 3.725±0.32 5.190±0.51 6.682±3.50 6.049±0.12 3.775±1.05 6.806±4.00 9.585±5.55 11.082±1.64

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00050N CIL_00050N_0002 CGP 6:106711975-106782474
CIL_00050M CIL_00050M_0002 CGP 6:106769120-106800074

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000049 ISS tRNA binding
GO:0001680 IEA tRNA 3'-terminal CCA addition
GO:0004810 ISS tRNA adenylyltransferase activity
GO:0005524 IEA ATP binding
GO:0005622 IEA intracellular
GO:0005739 ISS mitochondrion
GO:0008033 ISO tRNA processing
GO:0009022 ISO tRNA nucleotidyltransferase activity
GO:0042780 ISS tRNA 3'-end processing
GO:0052927 IEA CTP:tRNA cytidylyltransferase activity
GO:0052928 IEA CTP:3'-cytidine-tRNA cytidylyltransferase activity
GO:0052929 IEA ATP:3'-cytidine-cytidine-tRNA adenylyltransferase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000251607 TRNT1-001 protein_coding Homo_sapiens 0 1557
ENST00000280591 TRNT1-004 protein_coding Homo_sapiens 0 885
ENST00000397779 TRNT1-011 nonsense_mediated_decay Homo_sapiens 1e-32 143
ENST00000434583 TRNT1-010 nonsense_mediated_decay Homo_sapiens 0 1557
ENST00000438230 RP1-37M3.8-001 processed_pseudogene Homo_sapiens 0 728
ENST00000450164 RP11-267N12.2-001 processed_pseudogene Homo_sapiens 0 355
ENST00000482311 TRNT1-012 retained_intron Homo_sapiens 0 466

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