C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PHD finger protein 21B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000016624 Phf21b 10090 - 15:84785381-84856049 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000016768 Phf21b-004 84785381-84855110 protein_coding
  ENSMUST00000159502 Phf21b-005 84787371-84791494 retained_intron
  ENSMUST00000159939 Phf21b-001 84785384-84856049 protein_coding
  ENSMUST00000160389 Phf21b-006 84794643-84803557 retained_intron
  ENSMUST00000162044 Phf21b-003 84786134-84855751 nonsense_mediated_decay
  ENSMUST00000162996 Phf21b-007 84785382-84787449 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000016768ENSMUST00000159502ENSMUST00000159939ENSMUST00000160389ENSMUST00000162044
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000016768 N/A 0.395±0.02 N/A 16.034±0.05 N/A 0.747±0.00 N/A 0.069±0.02 N/A 0.071±0.02 N/A 0.140±0.10 0.437±0.12
ENSMUST00000159502 N/A N/A N/A N/A 0.501±0.00 N/A N/A N/A N/A N/A N/A 0.203±0.00 2.700±0.00
ENSMUST00000159939 N/A 0.602±0.16 0.393±0.00 14.562±2.85 0.386±0.00 1.820±0.64 0.468±0.00 0.077±0.01 N/A 0.254±0.00 0.863±0.00 0.171±0.03 0.368±0.17
ENSMUST00000160389 N/A N/A N/A N/A 0.438±0.00 N/A N/A 0.124±0.00 N/A 0.160±0.00 N/A 0.539±0.00 N/A
ENSMUST00000162044 1.057±0.00 N/A N/A N/A 0.166±0.00 N/A 0.453±0.14 0.122±0.00 0.170±0.03 0.158±0.04 0.284±0.18 0.152±0.00 0.374±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00054G CIL_00054G_0002 CGP 15:84720052-84856049

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000087105 CABZ01111990.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000087887 PHF21B (2 of 2) PHD finger protein 21B protein_coding Danio_rerio
ENSG00000056487 PHF21B PHD finger protein 21B protein_coding Homo_sapiens

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