C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: syndecan 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000017009 Sdc4 10090 - 2:164424247-164443887 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000017153 Sdc4-001 164424247-164443186 protein_coding
  ENSMUST00000142909 Sdc4-002 164425900-164443887 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000017153ENSMUST00000142909
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000017153 24.205±10.39 23.990±3.40 81.261±3.11 2.680±2.12 32.247±6.94 96.173±4.51 6.826±1.76 126.140±2.90 76.418±53.87 67.724±3.76 7.861±1.97 49.914±10.42 34.468±23.03 8.221±2.99
ENSMUST00000142909 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 25.114±18.09 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003L5 CIL_0003L5_0002 CGP 2:164403141-164443887

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001657 IEA ureteric bud development
GO:0001968 IEA fibronectin binding
GO:0005080 IEA protein kinase C binding
GO:0005515 IEA protein binding
GO:0005796 TAS Golgi lumen
GO:0005925 IEA focal adhesion
GO:0008092 IEA cytoskeletal protein binding
GO:0009986 IDA cell surface
GO:0016021 IEA integral component of membrane
GO:0043034 IEA costamere
GO:0045121 IEA membrane raft
GO:0045860 IEA positive regulation of protein kinase activity
GO:0051496 IEA positive regulation of stress fiber assembly
GO:0051894 IEA positive regulation of focal adhesion assembly
GO:0070053 IEA thrombospondin receptor activity
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000059906 sdc4 syndecan 4 protein_coding Danio_rerio
ENSG00000124145 SDC4 syndecan 4 protein_coding Homo_sapiens

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