C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: syndecan 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000017153 Sdc4-001 ENSMUSG00000017009 10090 - 2:164424247-164443186 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000017153
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000017153 24.205±10.39 23.990±3.40 81.261±3.11 2.680±2.12 32.247±6.94 96.173±4.51 6.826±1.76 126.140±2.90 76.418±53.87 67.724±3.76 7.861±1.97 49.914±10.42 34.468±23.03 8.221±2.99

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003L5 CIL_0003L5_0002 CGP 2:164403141-164443887

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001657 IEA ureteric bud development
GO:0001968 IEA fibronectin binding
GO:0005080 IEA protein kinase C binding
GO:0005515 IEA protein binding
GO:0005796 TAS Golgi lumen
GO:0005925 IEA focal adhesion
GO:0008092 IEA cytoskeletal protein binding
GO:0009986 IDA cell surface
GO:0016021 IEA integral component of membrane
GO:0043034 IEA costamere
GO:0045121 IEA membrane raft
GO:0045860 IEA positive regulation of protein kinase activity
GO:0051496 IEA positive regulation of stress fiber assembly
GO:0051894 IEA positive regulation of focal adhesion assembly
GO:0070053 IEA thrombospondin receptor activity
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000254351 SDC1-001 protein_coding Homo_sapiens 0.0000003 62
ENST00000372733 SDC4-001 protein_coding Homo_sapiens 0.00000000004 75
ENST00000381150 SDC1-201 protein_coding Homo_sapiens 0.0000004 62
ENST00000453285 SDC4P-001 processed_pseudogene Homo_sapiens 0 270

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