C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003L5_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000124232-ENSG00000124145 CGP 9606 20:45306851-45348424
GeneTranscriptPositionBiotype
ENSG00000124145 (SDC4)
syndecan 4 		ENST00000372733 (SDC4-001) 45325288-45348424 protein_coding
ENSG00000124159 (MATN4)
matrilin 4 		ENST00000353917 (MATN4-201) 45293767-45308297 protein_coding
ENST00000360607 (MATN4-004) 45293450-45308327 protein_coding
ENST00000372754 (MATN4-002) 45293445-45305591 protein_coding
ENST00000372756 (MATN4-001) 45293445-45305591 protein_coding
ENST00000537548 (MATN4-202) 45293767-45308529 protein_coding
ENSG00000275894 (RP3-453C12.14)
 ENST00000613646 (RP3-453C12.14-001) 45345115-45345823 sense_intronic

Homo sapiens Ensembl (GRCh38)

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CIL_0003L5_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000017007-ENSMUSG00000017009 CGP 10090 2:164403141-164443887
GeneTranscriptPositionBiotype
ENSMUSG00000016995 (Matn4)
matrilin 4 		ENSMUST00000103103 (Matn4-003) 164389393-164404614 protein_coding
ENSMUST00000103104 (Matn4-002) 164389393-164405160 protein_coding
ENSMUST00000109358 (Matn4-004) 164389393-164404612 protein_coding
ENSMUST00000109359 (Matn4-001) 164389393-164404612 protein_coding
ENSMUST00000154940 (Matn4-005) 164393918-164404613 retained_intron
ENSMUSG00000017007 (Rbpjl)
recombination signal binding protein for immunoglobulin kappa J region-like 		ENSMUST00000017151 (Rbpjl-001) 164403194-164415448 protein_coding
ENSMUST00000109356 (Rbpjl-003) 164403209-164411338 processed_transcript
ENSMUST00000137427 (Rbpjl-002) 164403141-164414791 retained_intron
ENSMUSG00000017009 (Sdc4)
syndecan 4 		ENSMUST00000017153 (Sdc4-001) 164424247-164443186 protein_coding
ENSMUST00000142909 (Sdc4-002) 164425900-164443887 processed_transcript

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003L5_0001ENSG00000124145ENST00000372733ENSG00000124159ENST00000353917ENST00000360607ENST00000372754ENST00000372756ENST00000537548ENSG00000275894ENST00000613646CIL_0003L5_0002ENSMUSG00000016995ENSMUST00000103103ENSMUST00000103104ENSMUST00000109358ENSMUST00000109359ENSMUST00000154940ENSMUSG00000017007ENSMUST00000017151ENSMUST00000109356ENSMUST00000137427ENSMUSG00000017009ENSMUST00000017153ENSMUST00000142909
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003L5_0001ENSG00000124145ENST00000372733ENSG00000124159ENST00000353917ENST00000360607ENSG00000275894ENST00000613646CIL_0003L5_0002ENSMUSG00000016995ENSMUST00000103103ENSMUST00000103104ENSMUST00000109358ENSMUST00000109359ENSMUST00000154940ENSMUSG00000017007ENSMUST00000017151ENSMUST00000109356ENSMUST00000137427ENSMUSG00000017009ENSMUST00000017153ENSMUST00000142909
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000124145 ENST00000372733 61.378±0.00 25.466±0.00 10.228±0.00 33.721±24.30 27.282±5.06 26.782±17.10 19.680±14.28 64.667±45.11 45.097±33.82 77.444±55.04 31.206±6.09 45.340±23.48 31.429±8.48 32.887±7.46
ENSG00000124159 ENST00000353917 0.022±0.00 N/A N/A 0.094±0.00 0.390±0.00 N/A N/A 0.055±0.00 0.142±0.00 N/A N/A 0.415±0.00 N/A 0.494±0.00
ENST00000360607 N/A 0.073±0.00 N/A N/A N/A 0.019±0.00 0.036±0.00 N/A N/A 0.163±0.00 N/A 0.330±0.00 N/A 0.244±0.00
ENST00000372754 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000372756 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000537548 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000275894 ENST00000613646 0.253±0.00 0.181±0.00 1.056±0.00 0.162±0.10 0.436±0.06 0.512±0.49 0.204±0.16 0.423±0.12 0.534±0.18 1.145±0.66 0.236±0.15 0.744±0.69 0.124±0.03 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000016995 ENSMUST00000103103 0.392±0.17 0.299±0.04 1.638±0.17 1.100±0.91 1.906±0.76 2.806±0.27 0.118±0.01 0.692±0.36 0.130±0.08 35.497±0.68 0.539±0.00 0.150±0.00 0.266±0.16 N/A
ENSMUST00000103104 0.212±0.07 0.289±0.16 N/A 0.221±0.00 0.405±0.30 2.287±0.00 0.201±0.09 0.315±0.06 0.265±0.00 N/A 0.317±0.13 0.215±0.10 0.307±0.00 0.096±0.05
ENSMUST00000109358 0.125±0.00 0.453±0.00 N/A N/A N/A N/A N/A N/A 0.033±0.01 N/A 0.329±0.21 0.113±0.02 0.048±0.00 0.091±0.05
ENSMUST00000109359 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.450±0.00 0.201±0.05 N/A N/A
ENSMUST00000154940 0.092±0.04 0.134±0.01 0.382±0.00 0.270±0.20 0.393±0.14 0.461±0.00 0.097±0.03 0.175±0.08 0.032±0.02 N/A 0.075±0.03 0.075±0.05 0.037±0.01 0.013±0.00
ENSMUSG00000017007 ENSMUST00000017151 N/A N/A N/A N/A N/A 5.810±0.34 N/A N/A 0.034±0.02 20.705±2.35 0.067±0.00 0.050±0.03 N/A 0.021±0.00
ENSMUST00000109356 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.081±0.00 N/A
ENSMUST00000137427 N/A 0.087±0.00 N/A N/A 0.164±0.11 1.125±0.59 0.026±0.00 0.054±0.00 0.022±0.01 9.804±3.48 0.020±0.00 0.019±0.00 0.021±0.00 0.031±0.01
ENSMUSG00000017009 ENSMUST00000017153 24.205±10.39 23.990±3.40 81.261±3.11 2.680±2.12 32.247±6.94 96.173±4.51 6.826±1.76 126.140±2.90 76.418±53.87 67.724±3.76 7.861±1.97 49.914±10.42 34.468±23.03 8.221±2.99
ENSMUST00000142909 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 25.114±18.09 N/A

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