C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: pipecolic acid oxidase
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000017453 Pipox 10090 - 11:77880615-77894096 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000017597 Pipox-001 77880615-77894096 protein_coding
  ENSMUST00000151383 Pipox-003 77881060-77882686 retained_intron
  ENSMUST00000155401 Pipox-002 77882619-77884544 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000017597ENSMUST00000151383ENSMUST00000155401
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000017597 0.076±0.04 2.431±0.53 0.121±0.00 2.006±1.53 0.270±0.09 0.387±0.12 0.153±0.04 110.056±10.11 65.495±44.04 0.443±0.06 0.036±0.02 1.037±0.37 0.217±0.14 0.114±0.07
ENSMUST00000151383 0.050±0.01 0.965±0.24 0.140±0.00 1.719±1.09 0.110±0.03 0.239±0.09 0.139±0.08 N/A N/A 0.278±0.14 0.077±0.04 0.780±0.43 0.134±0.00 N/A
ENSMUST00000155401 0.041±0.00 1.769±0.00 N/A N/A N/A 0.169±0.00 N/A N/A N/A 0.164±0.00 0.111±0.04 1.334±0.91 0.097±0.02 0.355±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00076L CIL_00076L_0003 CGP 11:77880615-77979048

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005102 IEA receptor binding
GO:0005777 IDA peroxisome
GO:0008115 ISS sarcosine oxidase activity
GO:0033514 ISS L-lysine catabolic process to acetyl-CoA via L-pipecolate
GO:0046653 IEA tetrahydrofolate metabolic process
GO:0050031 ISS L-pipecolate oxidase activity
GO:0055114 ISS oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000055591 pipox pipecolic acid oxidase protein_coding Danio_rerio
ENSG00000179761 PIPOX pipecolic acid oxidase protein_coding Homo_sapiens

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