C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: matrix metallopeptidase 9
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000017737 Mmp9 10090 + 2:164940780-164955850 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000017881 Mmp9-001 164948219-164955850 protein_coding
  ENSMUST00000134382 Mmp9-004 164950696-164951262 retained_intron
  ENSMUST00000137626 Mmp9-003 164940780-164948894 protein_coding
  ENSMUST00000144917 Mmp9-002 164954386-164955850 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000017881ENSMUST00000134382ENSMUST00000144917
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000017881 4.350±1.61 1.192±0.45 4.361±0.60 5.120±3.48 5.402±2.37 1.747±0.21 1.147±0.31 0.713±0.14 2.444±4.49 4.027±0.64 0.184±0.11 1.682±0.57 2.453±3.01 0.171±0.09
ENSMUST00000134382 N/A N/A N/A 1.465±0.00 N/A N/A N/A N/A N/A N/A 0.111±0.00 9.464±0.00 18.933±17.70 0.080±0.00
ENSMUST00000144917 N/A N/A N/A N/A 5.771±0.00 N/A N/A N/A N/A N/A 0.139±0.10 0.939±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007BJ CIL_0007BJ_0002 CGP 2:164891882-164955850
CIL_0006GI CIL_0006GI_0002 CGP 2:164940780-164999727

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001501 IGI skeletal system development
GO:0001503 IEA ossification
GO:0004222 IDA:ISS metalloendopeptidase activity
GO:0005515 IEA protein binding
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005615 ISS extracellular space
GO:0006508 ISS proteolysis
GO:0007566 IDA embryo implantation
GO:0008233 IDA peptidase activity
GO:0008270 IEA zinc ion binding
GO:0030198 IGI extracellular matrix organization
GO:0030574 IDA collagen catabolic process
GO:0035987 IEA endodermal cell differentiation
GO:0042802 IEA identical protein binding
GO:0043065 IMP positive regulation of apoptotic process
GO:0050900 IEA leukocyte migration
GO:0051549 IEA positive regulation of keratinocyte migration
GO:0070062 IEA extracellular vesicular exosome
GO:1900122 IEA positive regulation of receptor binding
GO:2001258 IEA negative regulation of cation channel activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000042816 mmp9 matrix metalloproteinase 9 protein_coding Danio_rerio
ENSG00000100985 MMP9 matrix metallopeptidase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase) protein_coding Homo_sapiens

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