C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007BJ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000198026-ENSG00000100985 CGP 9606 20:45948653-46016561
GeneTranscriptPositionBiotype
ENSG00000100985 (MMP9)
matrix metallopeptidase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase) 		ENST00000372330 (MMP9-001) 46008908-46016561 protein_coding
ENSG00000198026 (ZNF335)
zinc finger protein 335 		ENST00000322927 (ZNF335-001) 45948653-45972172 protein_coding
ENST00000475002 (ZNF335-004) 45961506-45964516 processed_transcript
ENST00000476822 (ZNF335-002) 45965693-45970225 processed_transcript
ENST00000494955 (ZNF335-003) 45966867-45968858 processed_transcript
ENSG00000204044 (RP11-465L10.10)
 ENST00000419897 (RP11-465L10.10-001) 46020619-46021727 antisense
ENST00000535913 (RP11-465L10.10-002) 46013500-46022073 antisense
ENSG00000235525 (FTLP1)
ferritin, light polypeptide pseudogene 1 		ENST00000449155 (FTLP1-001) 45975249-45976075 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0007BJ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000039834-ENSMUSG00000017737 CGP 10090 2:164891882-164955850
GeneTranscriptPositionBiotype
ENSMUSG00000017737 (Mmp9)
matrix metallopeptidase 9 		ENSMUST00000017881 (Mmp9-001) 164948219-164955850 protein_coding
ENSMUST00000134382 (Mmp9-004) 164950696-164951262 retained_intron
ENSMUST00000137626 (Mmp9-003) 164940780-164948894 protein_coding
ENSMUST00000144917 (Mmp9-002) 164954386-164955850 processed_transcript
ENSMUSG00000039834 (Zfp335)
zinc finger protein 335 		ENSMUST00000041361 (Zfp335-001) 164891882-164911757 protein_coding
ENSMUST00000139247 (Zfp335-004) 164902520-164907665 nonsense_mediated_decay
ENSMUST00000183830 (Zfp335-003) 164891882-164911757 nonsense_mediated_decay
ENSMUSG00000039849 (Pcif1)
PDX1 C-terminal inhibiting factor 1 		ENSMUST00000041643 (Pcif1-001) 164879365-164894454 protein_coding
ENSMUST00000122810 (Pcif1-004) 164880052-164883110 retained_intron
ENSMUST00000130213 (Pcif1-003) 164883933-164884694 retained_intron
ENSMUST00000145327 (Pcif1-002) 164879304-164883199 retained_intron
ENSMUSG00000085436 (Zfp335os)
zinc finger protein 335, opposite strand 		ENSMUST00000129364 (Zfp335os-001) 164911354-164919953 antisense
ENSMUST00000142338 (Zfp335os-002) 164914090-164919559 antisense

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007BJ_0001ENSG00000100985ENST00000372330ENSG00000198026ENST00000322927ENST00000475002ENST00000476822ENST00000494955ENSG00000204044ENST00000419897ENST00000535913ENSG00000235525ENST00000449155CIL_0007BJ_0002ENSMUSG00000017737ENSMUST00000017881ENSMUST00000134382ENSMUST00000137626ENSMUST00000144917ENSMUSG00000039834ENSMUST00000041361ENSMUST00000139247ENSMUST00000183830ENSMUSG00000039849ENSMUST00000041643ENSMUST00000122810ENSMUST00000130213ENSMUST00000145327ENSMUSG00000085436ENSMUST00000129364ENSMUST00000142338
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007BJ_0001ENSG00000100985ENST00000372330ENSG00000198026ENST00000322927ENST00000476822ENST00000494955ENSG00000204044ENST00000419897ENST00000535913ENSG00000235525ENST00000449155CIL_0007BJ_0002ENSMUSG00000017737ENSMUST00000017881ENSMUST00000134382ENSMUST00000144917ENSMUSG00000039834ENSMUST00000041361ENSMUSG00000039849ENSMUST00000041643ENSMUST00000145327ENSMUSG00000085436ENSMUST00000129364
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000100985 ENST00000372330 4.620±0.00 20.538±0.00 N/A N/A 14.579±13.60 1.135±0.32 0.768±0.00 0.538±0.14 0.757±0.26 7.398±4.16 0.264±0.00 3.640±1.95 6.787±1.81 1.466±0.00
ENSG00000198026 ENST00000322927 2.336±0.00 3.248±0.00 N/A 1.744±0.86 1.212±0.82 2.153±0.00 1.422±1.31 2.397±2.05 1.581±0.00 3.014±2.42 5.651±0.00 4.444±0.47 3.092±0.54 4.399±0.39
ENST00000475002 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476822 N/A N/A 0.727±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494955 N/A N/A N/A N/A N/A N/A N/A 0.456±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000204044 ENST00000419897 N/A N/A N/A N/A N/A N/A N/A 2.535±0.00 N/A N/A N/A N/A N/A N/A
ENST00000535913 1.103±0.00 7.562±0.00 N/A N/A N/A 0.217±0.00 0.161±0.00 0.113±0.00 0.130±0.00 N/A N/A N/A 1.561±0.00 N/A
ENSG00000235525 ENST00000449155 N/A N/A N/A N/A N/A N/A N/A 0.041±0.00 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000017737 ENSMUST00000017881 4.350±1.61 1.192±0.45 4.361±0.60 5.120±3.48 5.402±2.37 1.747±0.21 1.147±0.31 0.713±0.14 2.444±4.49 4.027±0.64 0.184±0.11 1.682±0.57 2.453±3.01 0.171±0.09
ENSMUST00000134382 N/A N/A N/A 1.465±0.00 N/A N/A N/A N/A N/A N/A 0.111±0.00 9.464±0.00 18.933±17.70 0.080±0.00
ENSMUST00000137626 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144917 N/A N/A N/A N/A 5.771±0.00 N/A N/A N/A N/A N/A 0.139±0.10 0.939±0.00 N/A N/A
ENSMUSG00000039834 ENSMUST00000041361 9.240±1.85 13.643±3.29 6.387±1.73 12.093±6.08 14.039±5.30 15.345±0.46 3.041±1.10 8.444±1.13 7.183±2.00 11.910±2.09 3.520±0.77 14.192±4.98 9.458±7.80 4.140±1.29
ENSMUST00000139247 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000183830 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000039849 ENSMUST00000041643 7.121±1.29 12.155±2.62 4.673±0.74 8.500±2.80 10.108±4.19 9.595±1.65 3.792±0.51 7.506±0.60 3.956±1.21 13.644±0.43 4.729±1.03 9.945±2.65 3.618±2.33 4.522±0.51
ENSMUST00000122810 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000130213 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145327 N/A 56.821±10.50 N/A N/A N/A N/A N/A N/A 12.255±0.00 N/A N/A N/A N/A N/A
ENSMUSG00000085436 ENSMUST00000129364 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.418±0.71
ENSMUST00000142338 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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