C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: myosin IC
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000017774 Myo1c 10090 + 11:75650504-75673910 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000069057 Myo1c-001 75651510-75673910 protein_coding
  ENSMUST00000102504 Myo1c-003 75652076-75673910 protein_coding
  ENSMUST00000102505 Myo1c-002 75650504-75673910 protein_coding
  ENSMUST00000108431 Myo1c-004 75655873-75673908 protein_coding
  ENSMUST00000123064 Myo1c-007 75665392-75669242 retained_intron
  ENSMUST00000136935 Myo1c-005 75656198-75657648 protein_coding
  ENSMUST00000146419 Myo1c-008 75668094-75670254 retained_intron
  ENSMUST00000148659 Myo1c-006 75661733-75665909 retained_intron
  ENSMUST00000151174 Myo1c-009 75656149-75669587 retained_intron
  ENSMUST00000155027 Myo1c-010 75670276-75671727 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000069057ENSMUST00000102505ENSMUST00000108431ENSMUST00000151174
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000069057 24.640±2.30 17.820±1.33 29.070±1.30 2.423±0.31 24.161±8.35 14.130±3.88 8.964±0.29 17.659±1.54 6.377±2.25 46.444±4.78 4.770±1.17 19.012±5.10 30.836±28.33 8.333±1.11
ENSMUST00000102505 43.797±24.44 14.554±4.04 6.865±0.00 0.793±0.33 21.591±1.65 6.649±1.19 10.176±0.89 19.542±2.33 2.645±0.68 21.408±2.84 1.850±0.62 8.734±2.06 35.589±11.65 N/A
ENSMUST00000108431 15.563±3.90 13.693±2.14 18.281±3.93 0.922±0.08 15.471±2.81 15.548±2.11 6.391±1.41 5.865±0.68 3.410±2.94 40.308±5.33 2.632±0.69 14.707±2.13 6.924±0.05 11.774±2.74
ENSMUST00000151174 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 19.999±0.00 27.154±1.42 8.282±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003774 IEA motor activity
GO:0003779 NAS actin binding
GO:0005102 IEA receptor binding
GO:0005515 IPI protein binding
GO:0005516 NAS calmodulin binding
GO:0005524 NAS ATP binding
GO:0005543 TAS phospholipid binding
GO:0005634 IEA nucleus
GO:0005643 IEA nuclear pore
GO:0005737 IEA cytoplasm
GO:0005739 IEA mitochondrion
GO:0005829 TAS cytosol
GO:0005886 IEA plasma membrane
GO:0005902 IEA microvillus
GO:0005903 IDA brush border
GO:0006200 IEA ATP catabolic process
GO:0006605 IEA protein targeting
GO:0006612 IEA protein targeting to membrane
GO:0006810 IDA transport
GO:0008022 IPI protein C-terminus binding
GO:0008152 IEA metabolic process
GO:0009925 IEA basal plasma membrane
GO:0016020 TAS membrane
GO:0016328 IEA lateral plasma membrane
GO:0030335 IEA positive regulation of cell migration
GO:0030898 IEA actin-dependent ATPase activity
GO:0031410 IEA cytoplasmic vesicle
GO:0031941 IEA filamentous actin
GO:0032420 IDA stereocilium
GO:0038089 IEA positive regulation of cell migration by vascular endothelial growth factor signaling pathway
GO:0045121 IEA membrane raft
GO:0045160 IDA myosin I complex
GO:0051028 IEA mRNA transport
GO:0070062 IEA extracellular vesicular exosome
GO:0090314 IEA positive regulation of protein targeting to membrane
GO:1900748 IEA positive regulation of vascular endothelial growth factor signaling pathway
GO:2000810 IEA regulation of tight junction assembly

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000020924 MYO1C si:ch211-69i14.4 (si:ch211-69i14.4), mRNA protein_coding Danio_rerio
ENSDARG00000061579 myo1c myosin IC protein_coding Danio_rerio
ENSG00000197879 MYO1C myosin IC protein_coding Homo_sapiens

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