C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: myosin IC
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000108431 Myo1c-004 ENSMUSG00000017774 10090 + 11:75655873-75673908 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000108431
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000108431 15.563±3.90 13.693±2.14 18.281±3.93 0.922±0.08 15.471±2.81 15.548±2.11 6.391±1.41 5.865±0.68 3.410±2.94 40.308±5.33 2.632±0.69 14.707±2.13 6.924±0.05 11.774±2.74

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003774 IEA motor activity
GO:0003779 NAS actin binding
GO:0005102 IEA receptor binding
GO:0005515 IPI protein binding
GO:0005516 NAS calmodulin binding
GO:0005524 NAS ATP binding
GO:0005543 TAS phospholipid binding
GO:0005634 IEA nucleus
GO:0005643 IEA nuclear pore
GO:0005737 IEA cytoplasm
GO:0005739 IEA mitochondrion
GO:0005829 TAS cytosol
GO:0005886 IEA plasma membrane
GO:0005902 IEA microvillus
GO:0005903 IDA brush border
GO:0006200 IEA ATP catabolic process
GO:0006605 IEA protein targeting
GO:0006612 IEA protein targeting to membrane
GO:0006810 IDA transport
GO:0008022 IPI protein C-terminus binding
GO:0008152 IEA metabolic process
GO:0009925 IEA basal plasma membrane
GO:0016020 TAS membrane
GO:0016328 IEA lateral plasma membrane
GO:0030335 IEA positive regulation of cell migration
GO:0030898 IEA actin-dependent ATPase activity
GO:0031410 IEA cytoplasmic vesicle
GO:0031941 IEA filamentous actin
GO:0032420 IDA stereocilium
GO:0038089 IEA positive regulation of cell migration by vascular endothelial growth factor signaling pathway
GO:0045121 IEA membrane raft
GO:0045160 IDA myosin I complex
GO:0051028 IEA mRNA transport
GO:0070062 IEA extracellular vesicular exosome
GO:0090314 IEA positive regulation of protein targeting to membrane
GO:1900748 IEA positive regulation of vascular endothelial growth factor signaling pathway
GO:2000810 IEA regulation of tight junction assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000258787 MYO1G-001 protein_coding Homo_sapiens 2e-30 139
ENST00000300119 MYO1A-001 protein_coding Homo_sapiens 0.00000000000002 86
ENST00000359786 MYO1C-001 protein_coding Homo_sapiens 0 4211
ENST00000361007 MYO1C-201 protein_coding Homo_sapiens 0 4215
ENST00000438665 MYO1C-010 protein_coding Homo_sapiens 0 4274
ENST00000442789 MYO1A-004 protein_coding Homo_sapiens 0.00000000000002 86
ENST00000463516 MYO1G-004 retained_intron Homo_sapiens 2e-30 139
ENST00000464434 MYO1G-002 nonsense_mediated_decay Homo_sapiens 1e-30 139
ENST00000480503 MYO1G-005 retained_intron Homo_sapiens 3e-30 139
ENST00000483585 MYO1G-003 retained_intron Homo_sapiens 2e-30 139
ENST00000488554 MYO1G-006 retained_intron Homo_sapiens 3e-30 139
ENST00000495831 MYO1G-007 nonsense_mediated_decay Homo_sapiens 1e-30 139
ENST00000545534 MYO1C-003 protein_coding Homo_sapiens 0 4096
ENST00000554234 MYO1A-009 nonsense_mediated_decay Homo_sapiens 0.00000000000002 86
ENST00000570490 MYO1C-011 protein_coding Homo_sapiens 0 564
ENST00000570984 MYO1C-007 protein_coding Homo_sapiens 0 1035
ENST00000571615 MYO1C-016 retained_intron Homo_sapiens 0 612
ENST00000571715 MYO1C-008 protein_coding Homo_sapiens 0 499
ENST00000571851 MYO1C-012 processed_transcript Homo_sapiens 0 418
ENST00000572615 MYO1C-019 retained_intron Homo_sapiens 0 355
ENST00000573198 MYO1C-013 processed_transcript Homo_sapiens 0 658
ENST00000573853 MYO1C-009 protein_coding Homo_sapiens 0 625
ENST00000574308 MYO1C-020 retained_intron Homo_sapiens 0 281
ENST00000574790 MYO1C-005 protein_coding Homo_sapiens 0 593
ENST00000575011 MYO1C-018 nonsense_mediated_decay Homo_sapiens 0 303
ENST00000575158 MYO1C-002 protein_coding Homo_sapiens 0 4211
ENST00000575335 MYO1C-006 protein_coding Homo_sapiens 0 510
ENST00000575864 MYO1C-017 retained_intron Homo_sapiens 0 590
ENST00000576822 MYO1C-014 processed_transcript Homo_sapiens 0 289

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