C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: CUE domain containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000018378 Cuedc1 10090 + 11:88098058-88194140 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000018522 Cuedc1-001 88099146-88194140 protein_coding
  ENSMUST00000125297 Cuedc1-006 88187821-88193004 retained_intron
  ENSMUST00000131964 Cuedc1-007 88098058-88100108 processed_transcript
  ENSMUST00000132377 Cuedc1-005 88182303-88183280 retained_intron
  ENSMUST00000133149 Cuedc1-003 88099290-88185365 retained_intron
  ENSMUST00000142564 Cuedc1-004 88186009-88188829 processed_transcript
  ENSMUST00000154812 Cuedc1-002 88162261-88194140 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000018522ENSMUST00000125297ENSMUST00000131964ENSMUST00000133149ENSMUST00000154812
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000018522 12.853±0.73 19.311±3.41 17.121±2.16 11.003±2.27 7.440±3.10 14.455±1.15 8.551±1.98 5.083±1.17 0.440±0.13 13.739±0.57 42.207±5.55 10.813±3.60 2.832±0.79 0.411±0.13
ENSMUST00000125297 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.259±0.79 0.797±0.00
ENSMUST00000131964 N/A N/A N/A N/A N/A N/A N/A N/A 0.122±0.05 N/A N/A N/A N/A 0.544±0.00
ENSMUST00000133149 6.780±1.05 N/A 11.523±0.17 6.584±1.65 5.537±0.59 N/A 4.437±0.20 2.255±0.44 0.326±0.08 5.863±1.14 10.439±0.00 7.545±2.31 2.380±1.54 0.343±0.13
ENSMUST00000154812 N/A N/A N/A N/A 3.155±0.00 N/A N/A N/A 0.207±0.06 N/A 8.668±1.33 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009DL CIL_0009DL_0002 VISTA 11:87880548-88481652
CIL_0009DM CIL_0009DM_0002 VISTA 11:87974079-88576075
CIL_0007PL CIL_0007PL_0002 UCNEbase 11:88049942-88585488
CIL_00039R CIL_00039R_0002 CGP 11:88068279-88194140

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000054748 cuedc1b CUE domain containing 1b protein_coding Danio_rerio
ENSDARG00000068716 cuedc1a CUE domain containing 1a protein_coding Danio_rerio
ENSG00000180891 CUEDC1 CUE domain containing 1 protein_coding Homo_sapiens

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