C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: CUE domain containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000180891 CUEDC1 9606 - 17:57861243-57955323 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000360238 CUEDC1-002 57862976-57903389 protein_coding
  ENST00000407144 CUEDC1-013 57862696-57892688 protein_coding
  ENST00000577422 CUEDC1-010 57862875-57867305 processed_transcript
  ENST00000577497 CUEDC1-008 57862963-57866857 retained_intron
  ENST00000577589 CUEDC1-003 57872811-57885837 protein_coding
  ENST00000577830 CUEDC1-001 57861243-57955323 protein_coding
  ENST00000577840 CUEDC1-004 57863272-57955257 protein_coding
  ENST00000578357 CUEDC1-011 57862963-57869938 processed_transcript
  ENST00000581391 CUEDC1-006 57862875-57868465 retained_intron
  ENST00000581898 CUEDC1-005 57862963-57872670 protein_coding
  ENST00000582951 CUEDC1-007 57862875-57867630 retained_intron
  ENST00000584746 CUEDC1-012 57861604-57871365 retained_intron
  ENST00000585294 CUEDC1-009 57862976-57867415 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000407144ENST00000577497ENST00000577589ENST00000577830ENST00000577840ENST00000578357ENST00000581391ENST00000581898ENST00000584746
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000407144 3.458±0.00 N/A N/A N/A 4.646±0.00 N/A 6.464±0.00 3.020±0.00 0.815±0.00 2.865±0.00 3.786±2.85 N/A N/A N/A
ENST00000577497 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.050±0.00 1.437±0.00 N/A N/A
ENST00000577589 N/A N/A 0.730±0.00 N/A N/A 1.429±0.00 0.683±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000577830 3.014±0.00 N/A 0.383±0.00 1.723±1.35 3.670±0.00 1.161±0.74 0.319±0.00 N/A 0.531±0.35 5.276±0.00 N/A 4.013±1.33 3.763±1.55 2.700±2.03
ENST00000577840 N/A 5.007±0.00 0.560±0.00 7.797±0.00 9.320±0.00 0.858±0.00 N/A 7.554±0.00 1.546±0.00 1.569±0.00 2.868±0.00 N/A 4.716±0.00 N/A
ENST00000578357 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.816±0.00 5.400±0.00 N/A
ENST00000581391 N/A N/A N/A N/A N/A N/A N/A N/A 0.773±0.00 N/A N/A N/A N/A N/A
ENST00000581898 N/A N/A N/A N/A N/A N/A N/A 0.293±0.00 N/A N/A N/A N/A N/A N/A
ENST00000584746 N/A 1.599±0.00 N/A N/A N/A N/A N/A 2.671±0.00 N/A 1.183±0.65 N/A 2.505±0.00 N/A 1.029±0.50

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007PL CIL_0007PL_0001 UCNEbase 17:57406597-58005077
CIL_0009DM CIL_0009DM_0001 VISTA 17:57461902-58063720
CIL_0009DL CIL_0009DL_0001 VISTA 17:57574410-58175690
CIL_0004WX CIL_0004WX_0002 CGP 17:57861243-57988259

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000054748 cuedc1b CUE domain containing 1b protein_coding Danio_rerio
ENSDARG00000068716 cuedc1a CUE domain containing 1a protein_coding Danio_rerio
ENSMUSG00000018378 Cuedc1 CUE domain containing 1 protein_coding Mus_musculus

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