C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: myosin IB
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000018561 Myo1b-002 ENSMUSG00000018417 10090 - 1:51749994-51915928 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000018561
Transcript ID Adipose Brain Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000018561 1.478±0.04 12.706±2.32 1.064±0.11 0.685±0.00 1.849±0.40 0.595±0.20 5.735±4.14 4.588±2.23 0.385±0.13

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003774 IEA motor activity
GO:0005524 IEA ATP binding
GO:0005769 IEA early endosome
GO:0005884 IEA actin filament
GO:0006892 IEA post-Golgi vesicle-mediated transport
GO:0007015 IEA actin filament organization
GO:0008152 IEA metabolic process
GO:0010008 IEA endosome membrane
GO:0016459 IEA myosin complex
GO:0032588 IEA trans-Golgi network membrane
GO:0048471 IEA perinuclear region of cytoplasm
GO:0051015 IEA actin filament binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000051360 MYH13 (3 of 10)-201 protein_coding Danio_rerio 0.000000000001 81
ENSDART00000075210 protein_coding Danio_rerio 0.00000000002 77
ENSDART00000123920 MYH13 (5 of 10)-202 protein_coding Danio_rerio 0.00000000002 77
ENSDART00000130036 MYH13 (5 of 10)-201 protein_coding Danio_rerio 0.00000000002 77
ENST00000252172 MYH13-001 protein_coding Homo_sapiens 0.0000000000005 82
ENST00000304164 MYO1B-001 protein_coding Homo_sapiens 0 4586
ENST00000339514 MYO1B-003 protein_coding Homo_sapiens 0 2979
ENST00000392316 MYO1B-002 protein_coding Homo_sapiens 0 3044
ENST00000392318 MYO1B-010 protein_coding Homo_sapiens 0 4586
ENST00000418404 MYH13-003 protein_coding Homo_sapiens 0.0000000000005 82
ENST00000427152 MYO1B-009 protein_coding Homo_sapiens 0 708
ENST00000451437 MYO1B-005 protein_coding Homo_sapiens 0 1158
ENST00000461714 MYO1B-014 retained_intron Homo_sapiens 6e-38 161
ENST00000471904 MYO1B-007 retained_intron Homo_sapiens 0 736
ENST00000490069 MYO1B-006 retained_intron Homo_sapiens 0 1375
ENST00000494129 MYO1B-004 retained_intron Homo_sapiens 0 749
ENST00000496992 MYO1B-013 processed_transcript Homo_sapiens 0 233
ENST00000621918 MYH13-201 protein_coding Homo_sapiens 0.0000000000005 82

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