C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: myosin IB
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000046390 Myo1b-001 ENSMUSG00000018417 10090 - 1:51749765-51916071 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000046390
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000046390 3.288±1.16 4.751±1.25 3.049±1.01 5.480±0.42 2.017±0.81 1.783±0.74 1.375±0.23 1.551±0.32 2.140±0.81 12.724±1.32 0.543±0.16 8.144±3.39 7.397±0.97 0.709±0.13

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000146 ISS microfilament motor activity
GO:0003774 IEA motor activity
GO:0003779 IEA actin binding
GO:0005516 IEA calmodulin binding
GO:0005524 IEA:ISS ATP binding
GO:0005546 ISS phosphatidylinositol-4,5-bisphosphate binding
GO:0005547 ISS phosphatidylinositol-3,4,5-trisphosphate binding
GO:0005737 ISS cytoplasm
GO:0005886 ISS plasma membrane
GO:0005903 ISS brush border
GO:0008152 IEA metabolic process
GO:0016459 IEA myosin complex
GO:0030048 ISS actin filament-based movement
GO:0030175 ISS filopodium
GO:0051017 ISS actin filament bundle assembly
GO:0071944 ISS cell periphery

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000051360 MYH13 (3 of 10)-201 protein_coding Danio_rerio 0.000000000002 81
ENSDART00000075210 protein_coding Danio_rerio 0.00000000002 77
ENSDART00000123920 MYH13 (5 of 10)-202 protein_coding Danio_rerio 0.00000000002 77
ENSDART00000130036 MYH13 (5 of 10)-201 protein_coding Danio_rerio 0.00000000002 77
ENST00000252172 MYH13-001 protein_coding Homo_sapiens 0.0000000000005 82
ENST00000304164 MYO1B-001 protein_coding Homo_sapiens 0 3062
ENST00000339514 MYO1B-003 protein_coding Homo_sapiens 0 2981
ENST00000392316 MYO1B-002 protein_coding Homo_sapiens 0 4449
ENST00000392318 MYO1B-010 protein_coding Homo_sapiens 0 3062
ENST00000418404 MYH13-003 protein_coding Homo_sapiens 0.0000000000005 82
ENST00000427152 MYO1B-009 protein_coding Homo_sapiens 0 708
ENST00000451437 MYO1B-005 protein_coding Homo_sapiens 0 1158
ENST00000461714 MYO1B-014 retained_intron Homo_sapiens 6e-38 161
ENST00000471904 MYO1B-007 retained_intron Homo_sapiens 0 736
ENST00000490069 MYO1B-006 retained_intron Homo_sapiens 0 1375
ENST00000494129 MYO1B-004 retained_intron Homo_sapiens 0 749
ENST00000496992 MYO1B-013 processed_transcript Homo_sapiens 0 233
ENST00000621918 MYH13-201 protein_coding Homo_sapiens 0.0000000000005 82

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