C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RPA interacting protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000018449 Rpain 10090 + 11:70970213-70977833 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000018593 Rpain-001 70970213-70977833 protein_coding
  ENSMUST00000108529 Rpain-011 70970507-70977687 protein_coding
  ENSMUST00000126815 Rpain-007 70970480-70974162 retained_intron
  ENSMUST00000129531 Rpain-004 70970491-70973491 retained_intron
  ENSMUST00000129540 Rpain-006 70974740-70977801 retained_intron
  ENSMUST00000136665 Rpain-005 70970486-70972349 retained_intron
  ENSMUST00000146788 Rpain-002 70972803-70977805 retained_intron
  ENSMUST00000151608 Rpain-008 70970529-70974429 retained_intron
  ENSMUST00000154430 Rpain-003 70970227-70971919 nonsense_mediated_decay
  ENSMUST00000167509 Rpain-013 70970507-70977687 protein_coding
  ENSMUST00000169965 Rpain-012 70970507-70977687 protein_coding
  ENSMUST00000171254 Rpain-009 70970507-70977687 nonsense_mediated_decay
  ENSMUST00000178822 Rpain-010 70970507-70977687 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000018593ENSMUST00000108529ENSMUST00000126815ENSMUST00000129531ENSMUST00000129540ENSMUST00000151608ENSMUST00000154430ENSMUST00000167509ENSMUST00000171254
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000018593 4.321±0.89 2.620±0.61 9.006±1.83 6.937±2.25 4.765±1.62 3.182±1.14 2.870±0.35 10.206±1.62 12.544±8.64 4.120±0.11 2.370±0.45 4.230±1.29 5.434±2.34 10.103±0.00
ENSMUST00000108529 N/A N/A N/A 38.516±0.00 N/A N/A N/A N/A N/A N/A 4.564±0.00 55.311±0.00 32.203±4.30 43.961±0.00
ENSMUST00000126815 N/A N/A N/A N/A N/A 3.198±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000129531 N/A N/A N/A N/A N/A N/A 1.560±0.28 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000129540 N/A 3.733±0.00 9.892±0.00 8.194±1.74 N/A 3.106±0.78 3.378±0.18 10.793±1.63 22.346±13.59 N/A 2.697±0.98 12.872±1.03 9.505±1.19 N/A
ENSMUST00000151608 N/A N/A 5.356±0.00 4.682±0.94 N/A N/A 1.165±0.00 N/A 8.654±4.72 N/A 1.511±0.27 6.334±1.46 4.391±0.48 4.406±0.00
ENSMUST00000154430 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.163±0.00
ENSMUST00000167509 N/A N/A N/A 5.308±0.00 N/A N/A N/A N/A N/A N/A N/A 9.444±0.00 7.342±0.78 9.906±0.00
ENSMUST00000171254 N/A N/A N/A N/A N/A N/A N/A 7.196±0.00 N/A N/A N/A N/A 7.897±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00045W CIL_00045W_0002 CGP 11:70943058-70977833
CIL_00060K CIL_00060K_0003 CGP 11:70970213-70983026

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000063021 rpain RPA interacting protein protein_coding Danio_rerio
ENSG00000129197 RPAIN RPA interacting protein protein_coding Homo_sapiens

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