C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Region Summary |
| CIL_00045W_0001 (Click to Hide/Show) |
| Source ID | Type | Tax ID | Position | |
|---|---|---|---|---|
| ENSG00000108559-ENSG00000129197 | CGP | 9606 | 17:5360963-5432876  |
|
| Gene | Transcript | Position | Biotype | |
ENSG00000108559  (NUP88)nucleoporin 88kDa |
ENST00000225696 (NUP88-004)
|
5386102-5419466 | protein_coding | |
|
ENST00000570937 (NUP88-007)
|
5391475-5399633 | retained_intron | ||
|
ENST00000572019 (NUP88-009)
|
5416553-5419676 | processed_transcript | ||
|
ENST00000572290 (NUP88-005)
|
5414100-5419661 | nonsense_mediated_decay | ||
|
ENST00000572809 (NUP88-006)
|
5408737-5418229 | protein_coding | ||
|
ENST00000573169 (NUP88-014)
|
5360963-5386208 | processed_transcript | ||
|
ENST00000573584 (NUP88-001)
|
5386026-5420160 | protein_coding | ||
|
ENST00000574087 (NUP88-011)
|
5386687-5387912 | retained_intron | ||
|
ENST00000574855 (NUP88-012)
|
5386104-5387132 | retained_intron | ||
|
ENST00000574867 (NUP88-002)
|
5388376-5419662 | retained_intron | ||
|
ENST00000575976 (NUP88-008)
|
5387544-5388250 | retained_intron | ||
|
ENST00000576708 (NUP88-010)
|
5361814-5388850 | nonsense_mediated_decay | ||
|
ENST00000576862 (NUP88-013)
|
5387084-5394979 | retained_intron | ||
|
ENSG00000108561 (C1QBP) complement component 1, q subcomponent binding protein |
ENST00000225698 (C1QBP-001)
|
5432777-5439155 | protein_coding | |
|
ENST00000570805 (C1QBP-007)
|
5433019-5448830 | protein_coding | ||
|
ENST00000573204 (C1QBP-006)
|
5433072-5434110 | retained_intron | ||
|
ENST00000573406 (C1QBP-002)
|
5434665-5439155 | retained_intron | ||
|
ENST00000573421 (C1QBP-005)
|
5433143-5433853 | retained_intron | ||
|
ENST00000574444 (C1QBP-003)
|
5432801-5438778 | protein_coding | ||
|
ENST00000576122 (C1QBP-004)
|
5438167-5438767 | protein_coding | ||
|
ENSG00000263220 (RP11-420A6.2) |
ENST00000572792 (RP11-420A6.2-001)
|
5364315-5371626 | antisense | |
| CIL_00045W_0002 (Click to Hide/Show) |
| Source ID | Type | Tax ID | Position | |
|---|---|---|---|---|
| ENSMUSG00000040667-ENSMUSG00000018449 | CGP | 10090 | 11:70943058-70977833 |
|
| Gene | Transcript | Position | Biotype | |
|
ENSMUSG00000018449 (Rpain) RPA interacting protein |
ENSMUST00000018593 (Rpain-001)
|
70970213-70977833 | protein_coding | |
|
ENSMUST00000108529 (Rpain-011)
|
70970507-70977687 | protein_coding | ||
|
ENSMUST00000126815 (Rpain-007)
|
70970480-70974162 | retained_intron | ||
|
ENSMUST00000129531 (Rpain-004)
|
70970491-70973491 | retained_intron | ||
|
ENSMUST00000129540 (Rpain-006)
|
70974740-70977801 | retained_intron | ||
|
ENSMUST00000136665 (Rpain-005)
|
70970486-70972349 | retained_intron | ||
|
ENSMUST00000146788 (Rpain-002)
|
70972803-70977805 | retained_intron | ||
|
ENSMUST00000151608 (Rpain-008)
|
70970529-70974429 | retained_intron | ||
|
ENSMUST00000154430 (Rpain-003)
|
70970227-70971919 | nonsense_mediated_decay | ||
|
ENSMUST00000167509 (Rpain-013)
|
70970507-70977687 | protein_coding | ||
|
ENSMUST00000169965 (Rpain-012)
|
70970507-70977687 | protein_coding | ||
|
ENSMUST00000171254 (Rpain-009)
|
70970507-70977687 | nonsense_mediated_decay | ||
|
ENSMUST00000178822 (Rpain-010)
|
70970507-70977687 | protein_coding | ||
|
ENSMUSG00000020817 (Rabep1) rabaptin, RAB GTPase binding effector protein 1 |
ENSMUST00000076270 (Rabep1-001)
|
70844778-70943105 | protein_coding | |
|
ENSMUST00000081362 (Rabep1-002)
|
70844975-70940483 | protein_coding | ||
|
ENSMUST00000100928 (Rabep1-003)
|
70844799-70941298 | protein_coding | ||
|
ENSMUST00000108533 (Rabep1-008)
|
70844942-70940646 | protein_coding | ||
|
ENSMUST00000142220 (Rabep1-005)
|
70844782-70941303 | retained_intron | ||
|
ENSMUST00000177731 (Rabep1-004)
|
70844925-70940940 | protein_coding | ||
|
ENSMUST00000178245 (Rabep1-007)
|
70844975-70940483 | protein_coding | ||
|
ENSMUST00000179114 (Rabep1-006)
|
70844792-70894121 | protein_coding | ||
|
ENSMUSG00000040667 (Nup88) nucleoporin 88 |
ENSMUST00000035283 (Nup88-003)
|
70943082-70969962 | protein_coding | |
|
ENSMUST00000108530 (Nup88-002)
|
70943102-70969954 | protein_coding | ||
|
ENSMUST00000108531 (Nup88-001)
|
70943072-70969973 | protein_coding | ||
|
ENSMUST00000123192 (Nup88-006)
|
70943077-70946362 | retained_intron | ||
|
ENSMUST00000123917 (Nup88-010)
|
70944413-70945034 | retained_intron | ||
|
ENSMUST00000128193 (Nup88-012)
|
70943938-70944488 | retained_intron | ||
|
ENSMUST00000129615 (Nup88-005)
|
70944683-70948815 | retained_intron | ||
|
ENSMUST00000133188 (Nup88-011)
|
70943980-70944737 | retained_intron | ||
|
ENSMUST00000138634 (Nup88-007)
|
70949565-70969961 | retained_intron | ||
|
ENSMUST00000141179 (Nup88-009)
|
70943879-70945100 | retained_intron | ||
|
ENSMUST00000145336 (Nup88-008)
|
70956200-70961791 | retained_intron | ||
|
ENSMUST00000148168 (Nup88-004)
|
70943058-70969959 | retained_intron | ||
|
ENSMUST00000178253 (Nup88-014)
|
70943176-70969880 | nonsense_mediated_decay | ||
|
ENSMUST00000178369 (Nup88-015)
|
70954461-70956462 | retained_intron | ||
|
ENSMUST00000180225 (Nup88-013)
|
70955159-70956913 | retained_intron | ||
Expression Patterns
|
