C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Gene Info | |||||
|---|---|---|---|---|---|
| Description: | RPA interacting protein | ||||
| Gene Accession | Gene Name | Tax ID | Strand | Position | Gene Biotype |
ENSG00000129197  |
RPAIN | 9606 | + |
17:5419641-5432876  |
protein_coding |
| Transcript Accession | Transcript Name | Position | Transcript Biotype | ||
| ENST00000327154 |
RPAIN-014 | 5419888-5432608 | protein_coding | ||
| ENST00000381208 |
RPAIN-002 | 5419641-5432876 | protein_coding | ||
| ENST00000381209 |
RPAIN-001 | 5419641-5432876 | protein_coding | ||
| ENST00000405578 |
RPAIN-012 | 5420200-5428653 | protein_coding | ||
| ENST00000536255 |
RPAIN-003 | 5419641-5432715 | protein_coding | ||
| ENST00000539417 |
RPAIN-005 | 5419641-5432876 | nonsense_mediated_decay | ||
| ENST00000570883 |
RPAIN-010 | 5420185-5428355 | retained_intron | ||
| ENST00000571043 |
RPAIN-008 | 5419641-5432876 | retained_intron | ||
| ENST00000571558 |
RPAIN-006 | 5419641-5432876 | nonsense_mediated_decay | ||
| ENST00000571613 |
RPAIN-009 | 5419641-5432876 | retained_intron | ||
| ENST00000572174 |
RPAIN-015 | 5420167-5423069 | retained_intron | ||
| ENST00000573126 |
RPAIN-013 | 5420200-5432704 | retained_intron | ||
| ENST00000573577 |
RPAIN-004 | 5419641-5432876 | nonsense_mediated_decay | ||
| ENST00000574003 |
RPAIN-017 | 5420202-5428309 | protein_coding | ||
| ENST00000575112 |
RPAIN-011 | 5420185-5431484 | nonsense_mediated_decay | ||
| ENST00000575599 |
RPAIN-007 | 5419641-5432876 | nonsense_mediated_decay | ||
| ENST00000575711 |
RPAIN-016 | 5420189-5421924 | retained_intron | ||
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_00060J | CIL_00060J_0002 | CGP | 17:5282265-5420160 |
| CIL_00045W | CIL_00045W_0001 | CGP | 17:5360963-5432876 |
| CIL_00060K | CIL_00060K_0002 | CGP | 17:5419641-5448830 |
Gene Ontology |
||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0005634 | IDA | nucleus |
| GO:0005730 | IDA | nucleolus |
| GO:0005737 | IEA | cytoplasm |
| GO:0006261 | IPI | DNA-dependent DNA replication |
| GO:0006281 | IPI | DNA repair |
| GO:0006310 | IPI | DNA recombination |
| GO:0006606 | IDA | protein import into nucleus |
| GO:0009411 | IDA | response to UV |
| GO:0016605 | IDA | PML body |
| GO:0032403 | IPI | protein complex binding |
| GO:0046872 | IEA | metal ion binding |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Description | Biotype | Species | |
|
ENSDARG00000063021
|
rpain | RPA interacting protein | protein_coding | Danio_rerio | |
|
ENSMUSG00000018449
|
Rpain | RPA interacting protein | protein_coding | Mus_musculus | |
