C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Y box protein 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000018554 Ybx2 10090 + 11:69935796-69941605 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000018698 Ybx2-001 69935796-69941605 protein_coding
  ENSMUST00000108601 Ybx2-002 69936327-69941597 protein_coding
  ENSMUST00000130377 Ybx2-004 69939847-69940662 retained_intron
  ENSMUST00000148395 Ybx2-005 69940544-69941595 retained_intron
  ENSMUST00000149194 Ybx2-003 69935914-69941576 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000018698ENSMUST00000108601ENSMUST00000130377ENSMUST00000148395ENSMUST00000149194
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000018698 2.079±0.00 3.810±2.55 N/A 8.453±0.00 1.485±0.50 10.030±2.54 5.205±0.04 6.123±1.00 0.065±0.03 0.566±0.20 1.623±0.51 4.709±1.42 0.575±0.32 728.056±83.75
ENSMUST00000108601 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.209±0.00 N/A N/A
ENSMUST00000130377 N/A N/A N/A 5.039±3.25 5.116±0.00 N/A N/A N/A 0.147±0.05 N/A 2.916±0.00 3.697±0.00 0.459±0.05 N/A
ENSMUST00000148395 N/A N/A 1.563±0.55 6.725±0.00 4.183±1.04 N/A 12.759±1.25 8.737±0.00 0.130±0.07 N/A 3.101±0.03 2.574±0.62 1.114±0.22 398.377±0.00
ENSMUST00000149194 2.655±1.18 2.598±0.71 N/A 1.982±0.00 2.714±1.09 20.249±1.19 6.197±0.00 6.779±1.51 0.214±0.15 0.533±0.00 1.663±0.00 6.417±2.34 0.447±0.42 778.908±394.66

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003682 IDA chromatin binding
GO:0003729 IDA mRNA binding
GO:0003730 IDA mRNA 3'-UTR binding
GO:0005737 IDA cytoplasm
GO:0005844 IDA polysome
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007286 IMP spermatid development
GO:0008289 IDA lipid binding
GO:0017148 IDA negative regulation of translation
GO:0030529 IDA ribonucleoprotein complex
GO:0043021 IDA ribonucleoprotein complex binding
GO:0045182 IDA translation regulator activity
GO:0048255 IMP mRNA stabilization
GO:0048477 IMP oogenesis
GO:0048599 IEA oocyte development
GO:0051100 IMP negative regulation of binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000006047 YBX2 Y box binding protein 2 protein_coding Homo_sapiens

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