C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Y box protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000018698 Ybx2-001 ENSMUSG00000018554 10090 + 11:69935796-69941605 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000018698
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000018698 2.079±0.00 3.810±2.55 8.453±0.00 1.485±0.50 10.030±2.54 5.205±0.04 6.123±1.00 0.065±0.03 0.566±0.20 1.623±0.51 4.709±1.42 0.575±0.32 728.056±83.75

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003682 IDA chromatin binding
GO:0003729 IDA mRNA binding
GO:0003730 IDA mRNA 3'-UTR binding
GO:0005737 IDA cytoplasm
GO:0005844 IDA polysome
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007286 IMP spermatid development
GO:0008289 IDA lipid binding
GO:0017148 IDA negative regulation of translation
GO:0030529 IDA ribonucleoprotein complex
GO:0043021 IDA ribonucleoprotein complex binding
GO:0045182 IDA translation regulator activity
GO:0048255 IMP mRNA stabilization
GO:0048477 IMP oogenesis
GO:0048599 IEA oocyte development
GO:0051100 IMP negative regulation of binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000007699 YBX2-001 protein_coding Homo_sapiens 0 1777
ENST00000394192 YBX2P1-001 processed_pseudogene Homo_sapiens 0 811
ENST00000554387 RGMA-005 nonsense_mediated_decay Homo_sapiens 7.00649e-44 183
ENST00000556658 RGMA-006 protein_coding Homo_sapiens 0 438
ENST00000557561 RP11-368J22.2-001 transcribed_processed_pseudogene Homo_sapiens 0 828
ENST00000557608 RGMA-011 retained_intron Homo_sapiens 0 268
ENST00000570627 YBX2-005 processed_transcript Homo_sapiens 3.00004e-41 172
ENST00000570720 YBX2-006 retained_intron Homo_sapiens 0 641
ENST00000571127 YBX2-004 retained_intron Homo_sapiens 0 547
ENST00000571464 YBX2-007 protein_coding Homo_sapiens 0 545
ENST00000571485 YBX2-003 retained_intron Homo_sapiens 0 1171
ENST00000571834 YBX2-002 retained_intron Homo_sapiens 0 1171

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