C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Y box protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000149194 Ybx2-003 ENSMUSG00000018554 10090 + 11:69935914-69941576 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000149194
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000149194 2.655±1.18 2.598±0.71 1.982±0.00 2.714±1.09 20.249±1.19 6.197±0.00 6.779±1.51 0.214±0.15 0.533±0.00 1.663±0.00 6.417±2.34 0.447±0.42 778.908±394.66

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003682 IDA chromatin binding
GO:0003729 IDA mRNA binding
GO:0003730 IDA mRNA 3'-UTR binding
GO:0005737 IDA cytoplasm
GO:0005844 IDA polysome
GO:0007286 IMP spermatid development
GO:0008289 IDA lipid binding
GO:0017148 IDA negative regulation of translation
GO:0030529 IDA ribonucleoprotein complex
GO:0043021 IDA ribonucleoprotein complex binding
GO:0045182 IDA translation regulator activity
GO:0048255 IMP mRNA stabilization
GO:0048477 IMP oogenesis
GO:0051100 IMP negative regulation of binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000007699 YBX2-001 protein_coding Homo_sapiens 0 1308
ENST00000554387 RGMA-005 nonsense_mediated_decay Homo_sapiens 7.00649e-44 183
ENST00000556658 RGMA-006 protein_coding Homo_sapiens 0 438
ENST00000557561 RP11-368J22.2-001 transcribed_processed_pseudogene Homo_sapiens 0 743
ENST00000557608 RGMA-011 retained_intron Homo_sapiens 0 268
ENST00000570627 YBX2-005 processed_transcript Homo_sapiens 8.00001e-42 174
ENST00000570720 YBX2-006 retained_intron Homo_sapiens 0 641
ENST00000571127 YBX2-004 retained_intron Homo_sapiens 2e-24 117
ENST00000571464 YBX2-007 protein_coding Homo_sapiens 0 545
ENST00000571485 YBX2-003 retained_intron Homo_sapiens 0 1142
ENST00000571834 YBX2-002 retained_intron Homo_sapiens 0 1142

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