C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cleavage and polyadenylation specific factor 4-like
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000018727 Cpsf4l 10090 - 11:113698172-113710017 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000018871 Cpsf4l-001 113698172-113710017 protein_coding
  ENSMUST00000100248 Cpsf4l-201 113698172-113709526 protein_coding
  ENSMUST00000106617 Cpsf4l-003 113698172-113708967 protein_coding
  ENSMUST00000151396 Cpsf4l-004 113702712-113709524 retained_intron
  ENSMUST00000173655 Cpsf4l-002 113698172-113709520 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000018871ENSMUST00000100248ENSMUST00000106617ENSMUST00000151396ENSMUST00000173655
Transcript ID Bladder Brain Breast Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000018871 N/A N/A N/A 0.071±0.00 0.622±0.00 N/A 0.043±0.00 N/A 0.367±0.26 9.035±0.00
ENSMUST00000100248 0.261±0.05 0.283±0.06 0.657±0.00 0.061±0.00 1.228±0.35 0.274±0.16 0.061±0.00 3.325±1.10 0.615±0.09 9.434±1.19
ENSMUST00000106617 N/A N/A 1.386±0.00 N/A 1.575±0.50 0.219±0.12 0.059±0.00 N/A 0.205±0.00 N/A
ENSMUST00000151396 0.585±0.01 1.182±0.09 N/A 0.131±0.00 N/A 0.277±0.06 0.222±0.12 1.764±0.00 0.382±0.15 N/A
ENSMUST00000173655 N/A N/A N/A N/A N/A N/A N/A 2.890±0.61 N/A 7.289±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007R4 CIL_0007R4_0002 VISTA 11:113433041-114034346
CIL_0008QM CIL_0008QM_0002 VISTA 11:113678008-114283381
CIL_00072C CIL_00072C_0002 CGP 11:113684412-113710017
CIL_00073C CIL_00073C_0002 CGP 11:113698172-113751881

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000187959 CPSF4L cleavage and polyadenylation specific factor 4-like protein_coding Homo_sapiens

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