C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008QM_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs2241 VISTA 9606 17:73240460-73843108
GeneTranscriptPositionBiotype
ENSG00000069188 (SDK2)
sidekick cell adhesion molecule 2 		ENST00000392650 (SDK2-002) 73334384-73644089 protein_coding
ENST00000410094 (SDK2-006) 73338443-73369213 processed_transcript
ENST00000424778 (SDK2-004) 73337939-73414655 protein_coding
ENST00000479356 (SDK2-001) 73357370-73437769 retained_intron
ENST00000585283 (SDK2-007) 73504340-73507594 processed_transcript
ENSG00000179604 (CDC42EP4)
CDC42 effector protein (Rho GTPase binding) 4 		ENST00000335793 (CDC42EP4-001) 73283624-73312175 protein_coding
ENST00000439510 (CDC42EP4-003) 73283625-73311993 protein_coding
ENST00000578516 (CDC42EP4-005) 73311054-73312005 processed_transcript
ENST00000579611 (CDC42EP4-004) 73286282-73312001 protein_coding
ENST00000580315 (CDC42EP4-006) 73286119-73311408 protein_coding
ENST00000581014 (CDC42EP4-009) 73285178-73311997 protein_coding
ENST00000581045 (CDC42EP4-007) 73286518-73310198 processed_transcript
ENST00000582303 (CDC42EP4-008) 73306698-73309895 processed_transcript
ENSG00000234721 (AC125421.1)
 ENST00000455366 (AC125421.1-001) 73786822-73800793 lincRNA
ENST00000584660 (AC125421.1-003) 73786802-73790716 lincRNA
ENSG00000263574 (CTD-2532D12.4)
 ENST00000583854 (CTD-2532D12.4-001) 73737854-73756557 lincRNA
ENSG00000264985 (RP11-449L23.2)
 ENST00000583547 (RP11-449L23.2-001) 73513685-73518770 antisense
ENSG00000265010 (RP11-661C3.2)
 ENST00000579037 (RP11-661C3.2-001) 73243093-73244706 sense_intronic
ENSG00000265780 (RP11-449L23.3)
 ENST00000583712 (RP11-449L23.3-001) 73519846-73521407 antisense
ENSG00000265927 (CTD-2532D12.5)
 ENST00000580370 (CTD-2532D12.5-001) 73831572-73836019 lincRNA
ENST00000580776 (CTD-2532D12.5-002) 73834767-73835979 lincRNA
ENSG00000265935 (RP11-277J6.3)
 ENST00000584916 (RP11-277J6.3-001) 73662568-73663848 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0008QM_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs2241 VISTA 10090 11:113678008-114283381
GeneTranscriptPositionBiotype
ENSMUSG00000018727 (Cpsf4l)
cleavage and polyadenylation specific factor 4-like 		ENSMUST00000018871 (Cpsf4l-001) 113698172-113710017 protein_coding
ENSMUST00000100248 (Cpsf4l-201) 113698172-113709526 protein_coding
ENSMUST00000106617 (Cpsf4l-003) 113698172-113708967 protein_coding
ENSMUST00000151396 (Cpsf4l-004) 113702712-113709524 retained_intron
ENSMUST00000173655 (Cpsf4l-002) 113698172-113709520 protein_coding
ENSMUSG00000041592 (Sdk2)
sidekick homolog 2 (chicken) 		ENSMUST00000041627 (Sdk2-001) 113776374-114066218 protein_coding
ENSMUST00000125879 (Sdk2-005) 113806341-113826219 processed_transcript
ENSMUST00000141943 (Sdk2-003) 113848562-114065975 protein_coding
ENSMUST00000144301 (Sdk2-004) 113941423-114067029 processed_transcript
ENSMUST00000155651 (Sdk2-002) 113865600-114067046 processed_transcript
ENSMUST00000156955 (Sdk2-006) 113793839-113810423 processed_transcript
ENSMUSG00000041598 (Cdc42ep4)
CDC42 effector protein (Rho GTPase binding) 4 		ENSMUST00000053536 (Cdc42ep4-001) 113726852-113751881 protein_coding
ENSMUST00000106616 (Cdc42ep4-002) 113726850-113751318 protein_coding
ENSMUST00000131488 (Cdc42ep4-004) 113728983-113739322 protein_coding
ENSMUST00000153453 (Cdc42ep4-003) 113729305-113751154 protein_coding
ENSMUSG00000041623 (D11Wsu47e)
DNA segment, Chr 11, Wayne State University 47, expressed 		ENSMUST00000042227 (D11Wsu47e-002) 113684412-113694647 protein_coding
ENSMUST00000106621 (D11Wsu47e-001) 113684447-113694647 protein_coding
ENSMUST00000123466 (D11Wsu47e-003) 113684440-113688213 protein_coding
ENSMUST00000153732 (D11Wsu47e-004) 113685086-113688128 protein_coding
ENSMUSG00000041629 (Fam104a)
family with sequence similarity 104, member A 		ENSMUST00000120194 (Fam104a-001) 113661319-113684155 protein_coding
ENSMUSG00000075431 (Gm11691)
predicted gene 11691 		ENSMUST00000130963 (Gm11691-001) 114251843-114253127 lincRNA
ENSMUSG00000078600 (1700092K14Rik)
RIKEN cDNA 1700092K14 gene 		ENSMUST00000106604 (1700092K14Rik-001) 114198258-114199199 processed_transcript
ENSMUSG00000083090 (Gm11736)
predicted gene 11736 		ENSMUST00000121468 (Gm11736-001) 113756702-113757206 processed_pseudogene
ENSMUSG00000083339 (Gm11693)
predicted gene 11693 		ENSMUST00000119625 (Gm11693-001) 113678530-113679331 processed_pseudogene
ENSMUSG00000085844 (Gm11690)
predicted gene 11690 		ENSMUST00000128183 (Gm11690-001) 114219239-114238502 lincRNA
ENSMUSG00000086135 (1700001J04Rik)
RIKEN cDNA 1700001J04 gene 		ENSMUST00000126577 (1700001J04Rik-002) 114185973-114186674 antisense
ENSMUST00000154037 (1700001J04Rik-001) 114185439-114186777 antisense
ENSMUSG00000086760 (1700025D23Rik)
RIKEN cDNA 1700025D23 gene 		ENSMUST00000129365 (1700025D23Rik-001) 114091406-114095336 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008QM_0001ENSG00000069188ENST00000392650ENST00000410094ENST00000424778ENST00000479356ENST00000585283ENSG00000179604ENST00000335793ENST00000439510ENST00000578516ENST00000579611ENST00000580315ENST00000581014ENST00000581045ENST00000582303ENSG00000234721ENST00000455366ENST00000584660ENSG00000263574ENST00000583854ENSG00000264985ENST00000583547ENSG00000265010ENST00000579037ENSG00000265780ENST00000583712ENSG00000265927ENST00000580370ENST00000580776ENSG00000265935ENST00000584916CIL_0008QM_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008QM_0001ENSG00000069188ENST00000392650ENST00000410094ENST00000424778ENST00000479356ENST00000585283ENSG00000179604ENST00000335793ENST00000439510ENST00000579611ENST00000580315ENSG00000234721ENST00000455366ENST00000584660ENSG00000263574ENST00000583854ENSG00000264985ENST00000583547ENSG00000265010ENST00000579037ENSG00000265780ENST00000583712ENSG00000265927ENST00000580370ENST00000580776ENSG00000265935ENST00000584916CIL_0008QM_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
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000069188 ENST00000392650 N/A 0.094±0.00 0.042±0.00 0.271±0.12 N/A N/A N/A N/A 0.046±0.00 N/A N/A N/A N/A 1.039±0.31
ENST00000410094 N/A N/A N/A N/A 0.283±0.00 N/A N/A N/A 0.142±0.00 N/A N/A 0.330±0.00 0.411±0.00 N/A
ENST00000424778 0.051±0.00 N/A N/A N/A N/A 0.254±0.00 0.187±0.00 N/A N/A 0.194±0.13 N/A 0.241±0.06 0.542±0.00 10.741±0.12
ENST00000479356 N/A N/A N/A N/A N/A N/A 0.068±0.00 N/A N/A 0.074±0.00 N/A N/A 0.220±0.00 8.280±0.00
ENST00000585283 N/A N/A N/A N/A N/A N/A N/A N/A 0.443±0.00 N/A N/A N/A N/A N/A
ENSG00000179604 ENST00000335793 43.545±0.00 16.873±0.00 N/A 10.685±8.90 9.265±7.69 13.215±11.31 8.084±6.15 5.778±3.91 2.866±2.00 10.153±8.71 5.262±0.00 35.574±21.37 21.003±0.91 11.923±0.00
ENST00000439510 34.887±0.00 13.384±0.00 N/A 12.924±11.25 17.413±0.00 15.901±0.00 N/A 9.822±0.00 2.886±0.60 4.565±3.87 1.037±0.00 4.063±0.74 7.070±1.41 5.979±4.35
ENST00000578516 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000579611 N/A N/A 5.056±0.00 N/A N/A N/A N/A N/A N/A N/A 1.741±0.00 N/A N/A N/A
ENST00000580315 N/A N/A N/A N/A N/A 3.978±0.00 N/A N/A 6.437±0.00 N/A N/A 5.570±0.00 N/A N/A
ENST00000581014 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000581045 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000582303 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000234721 ENST00000455366 0.006±0.00 N/A N/A 0.007±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.056±0.03
ENST00000584660 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.025±0.00
ENSG00000263574 ENST00000583854 N/A N/A N/A N/A N/A N/A 0.016±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000264985 ENST00000583547 N/A N/A N/A 0.091±0.02 N/A 0.017±0.00 N/A N/A N/A 0.117±0.00 N/A 0.024±0.00 N/A 0.021±0.00
ENSG00000265010 ENST00000579037 N/A 0.600±0.00 N/A 0.206±0.00 0.298±0.00 0.176±0.00 0.037±0.00 0.234±0.00 0.034±0.00 0.099±0.00 N/A 0.113±0.00 N/A 0.258±0.03
ENSG00000265780 ENST00000583712 0.023±0.00 0.092±0.00 N/A 0.100±0.04 0.048±0.00 0.054±0.00 0.077±0.00 0.012±0.00 0.010±0.00 0.021±0.00 0.061±0.00 0.052±0.00 N/A 0.173±0.00
ENSG00000265927 ENST00000580370 0.034±0.00 N/A N/A 0.041±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.066±0.00
ENST00000580776 N/A N/A N/A N/A N/A N/A N/A 0.241±0.00 N/A N/A N/A N/A N/A 0.308±0.00
ENSG00000265935 ENST00000584916 N/A N/A N/A N/A N/A N/A N/A 0.140±0.00 N/A N/A N/A N/A N/A 0.284±0.06
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000018727 ENSMUST00000018871 N/A N/A N/A N/A N/A N/A 0.071±0.00 0.622±0.00 N/A N/A 0.043±0.00 N/A 0.367±0.26 9.035±0.00
ENSMUST00000100248 N/A N/A 0.261±0.05 0.283±0.06 0.657±0.00 N/A 0.061±0.00 1.228±0.35 0.274±0.16 N/A 0.061±0.00 3.325±1.10 0.615±0.09 9.434±1.19
ENSMUST00000106617 N/A N/A N/A N/A 1.386±0.00 N/A N/A 1.575±0.50 0.219±0.12 N/A 0.059±0.00 N/A 0.205±0.00 N/A
ENSMUST00000151396 N/A N/A 0.585±0.01 1.182±0.09 N/A N/A 0.131±0.00 N/A 0.277±0.06 N/A 0.222±0.12 1.764±0.00 0.382±0.15 N/A
ENSMUST00000173655 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.890±0.61 N/A 7.289±0.00
ENSMUSG00000041592 ENSMUST00000041627 0.374±0.05 0.149±0.06 N/A 1.888±1.26 0.129±0.08 0.259±0.10 0.103±0.04 0.076±0.02 0.045±0.03 0.165±0.05 0.033±0.01 0.250±0.15 1.489±1.60 1.010±0.74
ENSMUST00000125879 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.239±0.00 4.606±0.00
ENSMUST00000141943 N/A N/A N/A N/A N/A N/A 0.098±0.00 N/A N/A N/A N/A 0.333±0.00 N/A N/A
ENSMUST00000144301 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.405±0.00 N/A N/A
ENSMUST00000155651 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.189±0.00 N/A N/A
ENSMUST00000156955 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.144±0.00 N/A N/A N/A
ENSMUSG00000041598 ENSMUST00000053536 29.145±5.72 87.339±13.85 8.767±0.69 17.039±11.53 23.203±4.85 21.075±3.65 4.314±0.95 7.118±0.57 8.917±1.79 40.509±10.82 1.661±0.54 23.241±7.34 17.791±2.18 6.222±0.22
ENSMUST00000106616 3.483±0.37 N/A 1.892±0.07 N/A 2.938±0.15 2.677±0.22 0.489±0.04 0.839±0.11 2.582±1.17 5.242±0.70 N/A 2.915±0.82 2.400±0.09 6.320±2.83
ENSMUST00000131488 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153453 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000041623 ENSMUST00000042227 1.036±0.03 1.145±0.46 2.025±0.49 2.822±1.41 1.533±0.23 1.127±0.65 0.437±0.04 1.337±0.65 1.635±0.91 1.328±0.68 0.302±0.15 1.671±0.33 2.934±1.44 21.637±0.00
ENSMUST00000106621 3.064±0.96 N/A 2.081±0.07 5.393±1.01 0.715±0.24 1.109±0.44 0.600±0.31 1.076±0.48 1.720±0.96 0.820±0.24 0.638±0.32 3.263±1.67 3.108±0.96 105.001±6.89
ENSMUST00000123466 N/A N/A N/A 2.160±0.00 N/A N/A N/A N/A N/A N/A N/A 3.498±0.00 N/A N/A
ENSMUST00000153732 N/A N/A N/A 2.488±0.00 N/A N/A N/A N/A N/A N/A N/A 6.358±1.76 4.341±1.69 156.049±0.00
ENSMUSG00000041629 ENSMUST00000120194 15.133±2.79 39.722±8.21 19.501±1.27 22.349±10.49 19.418±3.95 30.362±3.31 6.760±1.38 15.787±2.98 15.093±6.27 17.914±3.70 12.036±1.23 25.059±7.46 13.507±3.90 52.246±26.81
ENSMUSG00000075431 ENSMUST00000130963 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.044±0.05
ENSMUSG00000078600 ENSMUST00000106604 0.157±0.00 N/A N/A 0.129±0.00 N/A N/A N/A N/A 0.029±0.00 N/A N/A N/A N/A 1.359±0.53
ENSMUSG00000083090 ENSMUST00000121468 0.265±0.01 N/A 0.068±0.04 0.127±0.02 0.302±0.15 N/A N/A 0.089±0.00 0.037±0.04 0.166±0.04 N/A 0.447±0.13 0.372±0.28 0.092±0.01
ENSMUSG00000083339 ENSMUST00000119625 0.182±0.04 0.095±0.00 0.092±0.02 0.085±0.03 0.153±0.01 0.146±0.10 0.048±0.00 0.081±0.03 0.178±0.12 0.058±0.00 N/A 0.110±0.01 0.280±0.07 0.145±0.12
ENSMUSG00000085844 ENSMUST00000128183 0.037±0.00 0.057±0.00 0.009±0.00 N/A 0.760±0.35 0.068±0.03 0.034±0.01 0.025±0.01 0.113±0.00 0.180±0.04 N/A 0.024±0.01 0.013±0.01 0.113±0.00
ENSMUSG00000086135 ENSMUST00000126577 N/A N/A 0.022±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.524±1.03
ENSMUST00000154037 N/A N/A 0.013±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.815±0.13
ENSMUSG00000086760 ENSMUST00000129365 N/A N/A N/A 0.010±0.00 N/A N/A 0.034±0.00 N/A N/A N/A 0.093±0.02 0.048±0.00 0.010±0.00 15.136±7.12

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