C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transmembrane 4 superfamily member 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000018919 Tm4sf5 10090 + 11:70505244-70511178 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000019063 Tm4sf5-001 70505244-70511178 protein_coding
  ENSMUST00000141924 Tm4sf5-002 70510206-70510967 retained_intron
  ENSMUST00000179986 Tm4sf5-003 70509970-70510882 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000019063ENSMUST00000141924ENSMUST00000179986
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000019063 0.477±0.06 0.291±0.06 0.178±0.07 N/A 0.608±0.26 1.667±0.23 0.891±0.06 0.106±0.00 0.780±0.39 0.442±0.31 1.847±0.63 4.886±5.40 0.052±0.00
ENSMUST00000141924 0.910±0.00 N/A 0.168±0.01 0.294±0.17 0.930±0.01 N/A N/A 0.129±0.02 0.257±0.10 0.293±0.00 0.589±0.00 0.277±0.22 0.874±0.42
ENSMUST00000179986 0.192±0.00 0.199±0.00 N/A 0.193±0.02 0.462±0.25 N/A N/A 0.045±0.00 N/A 0.207±0.00 N/A N/A 0.674±0.39

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001RB CIL_0001RB_0002 CGP 11:70459433-70511178
CIL_0000RU CIL_0000RU_0002 CGP 11:70505244-70514616

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000055185 tm4sf5 transmembrane 4 L six family member 5 protein_coding Danio_rerio
ENSG00000142484 TM4SF5 transmembrane 4 L six family member 5 protein_coding Homo_sapiens

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