C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001RB_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000141497-ENSG00000142484 CGP 9606 17:4740015-4783213
GeneTranscriptPositionBiotype
ENSG00000142484 (TM4SF5)
transmembrane 4 L six family member 5 		ENST00000270560 (TM4SF5-001) 4771892-4783211 protein_coding
ENST00000576530 (TM4SF5-002) 4771884-4783213 retained_intron

Homo sapiens Ensembl (GRCh38)

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CIL_0001RB_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000040829-ENSMUSG00000018919 CGP 10090 11:70459433-70511178
GeneTranscriptPositionBiotype
ENSMUSG00000018919 (Tm4sf5)
transmembrane 4 superfamily member 5 		ENSMUST00000019063 (Tm4sf5-001) 70505244-70511178 protein_coding
ENSMUST00000141924 (Tm4sf5-002) 70510206-70510967 retained_intron
ENSMUST00000179986 (Tm4sf5-003) 70509970-70510882 processed_transcript
ENSMUSG00000018920 (Cxcl16)
chemokine (C-X-C motif) ligand 16 		ENSMUST00000019064 (Cxcl16-001) 70453983-70459984 protein_coding
ENSMUST00000126391 (Cxcl16-002) 70454238-70459408 nonsense_mediated_decay
ENSMUST00000154475 (Cxcl16-004) 70455190-70459832 retained_intron
ENSMUSG00000040829 (Zmynd15)
zinc finger, MYND-type containing 15 		ENSMUST00000039093 (Zmynd15-001) 70459622-70466202 protein_coding
ENSMUST00000092958 (Zmynd15-002) 70460565-70466090 protein_coding
ENSMUST00000108563 (Zmynd15-005) 70459433-70466202 protein_coding
ENSMUST00000126105 (Zmynd15-004) 70460137-70460896 protein_coding
ENSMUST00000136029 (Zmynd15-006) 70460196-70466199 retained_intron
ENSMUST00000147289 (Zmynd15-003) 70459940-70460862 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001RB_0001ENSG00000142484ENST00000270560ENST00000576530CIL_0001RB_0002ENSMUSG00000018919ENSMUST00000019063ENSMUST00000141924ENSMUST00000179986ENSMUSG00000018920ENSMUST00000019064ENSMUST00000126391ENSMUST00000154475ENSMUSG00000040829ENSMUST00000039093ENSMUST00000092958ENSMUST00000108563ENSMUST00000126105ENSMUST00000136029ENSMUST00000147289
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001RB_0001ENSG00000142484ENST00000270560ENST00000576530CIL_0001RB_0002ENSMUSG00000018919ENSMUST00000019063ENSMUST00000141924ENSMUST00000179986ENSMUSG00000018920ENSMUST00000019064ENSMUST00000126391ENSMUSG00000040829ENSMUST00000039093ENSMUST00000108563ENSMUST00000136029
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000142484 ENST00000270560 N/A N/A 0.138±0.00 N/A 0.119±0.00 2.926±0.68 N/A 4.853±0.38 214.032±0.00 N/A N/A 6.316±5.88 2.032±0.89 0.122±0.00
ENST00000576530 N/A N/A N/A N/A N/A 0.318±0.00 N/A 1.246±0.00 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000018919 ENSMUST00000019063 0.477±0.06 0.291±0.06 0.178±0.07 N/A 0.608±0.26 1.667±0.23 0.891±0.06 0.106±0.00 0.780±0.39 0.442±0.31 N/A 1.847±0.63 4.886±5.40 0.052±0.00
ENSMUST00000141924 0.910±0.00 N/A 0.168±0.01 0.294±0.17 0.930±0.01 N/A N/A 0.129±0.02 0.257±0.10 0.293±0.00 N/A 0.589±0.00 0.277±0.22 0.874±0.42
ENSMUST00000179986 0.192±0.00 0.199±0.00 N/A 0.193±0.02 0.462±0.25 N/A N/A 0.045±0.00 N/A 0.207±0.00 N/A N/A N/A 0.674±0.39
ENSMUSG00000018920 ENSMUST00000019064 14.157±6.33 12.095±1.28 4.977±0.62 0.670±0.24 28.517±7.90 12.500±2.56 6.092±0.63 30.051±1.69 2.839±2.17 35.734±2.67 0.324±0.27 21.376±8.74 0.778±0.65 N/A
ENSMUST00000126391 11.596±0.00 N/A 9.369±0.02 0.525±0.30 N/A 7.446±0.04 N/A 23.843±2.11 1.633±1.33 N/A 0.508±0.34 8.024±0.60 1.891±1.23 N/A
ENSMUST00000154475 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000040829 ENSMUST00000039093 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.115±0.00 N/A N/A 70.618±28.76
ENSMUST00000092958 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000108563 4.027±1.80 2.970±0.56 1.651±0.00 0.213±0.08 7.815±2.31 3.760±0.08 N/A 6.552±0.66 1.019±0.46 9.045±1.92 0.238±0.20 4.455±1.20 0.533±0.37 N/A
ENSMUST00000126105 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136029 2.031±0.73 1.024±0.00 1.095±0.00 0.729±0.12 4.322±0.37 N/A 0.948±0.02 N/A 0.305±0.22 N/A 0.076±0.03 1.740±0.43 N/A N/A
ENSMUST00000147289 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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