C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RAB3D, member RAS oncogene family
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000019066 Rab3d 10090 - 9:21907491-21918192 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000115351 Rab3d-001 21907491-21918192 protein_coding
  ENSMUST00000119055 Rab3d-005 21908642-21918117 protein_coding
  ENSMUST00000122211 Rab3d-002 21907510-21918139 protein_coding
  ENSMUST00000128442 Rab3d-004 21914892-21918089 protein_coding
  ENSMUST00000154019 Rab3d-003 21915615-21918121 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000115351ENSMUST00000119055ENSMUST00000122211
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000115351 30.455±11.89 31.676±2.43 19.027±0.51 3.532±2.33 24.049±1.20 58.170±2.28 4.067±0.49 5.335±0.39 4.626±2.46 21.905±0.44 0.954±0.11 12.556±3.54 2.795±2.32 3.785±1.87
ENSMUST00000119055 49.832±24.05 33.624±6.85 N/A 5.332±1.53 39.454±4.50 78.934±11.09 6.158±1.41 8.042±2.25 4.924±2.70 31.421±2.08 N/A 16.836±2.28 5.440±0.79 5.287±1.72
ENSMUST00000122211 N/A N/A N/A 0.212±0.00 N/A N/A N/A N/A N/A N/A 0.151±0.00 2.215±1.01 0.197±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00016R CIL_00016R_0003 CGP 9:21907491-21927535

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005739 IDA mitochondrion
GO:0005886 IEA plasma membrane
GO:0006887 IEA exocytosis
GO:0007264 IEA small GTPase mediated signal transduction
GO:0015031 IEA protein transport
GO:0017157 IDA regulation of exocytosis
GO:0018125 IDA peptidyl-cysteine methylation
GO:0030133 IEA transport vesicle
GO:0031489 IEA myosin V binding
GO:0042588 IDA zymogen granule
GO:0051020 IEA GTPase binding
GO:0070062 IEA extracellular vesicular exosome
GO:1903307 IEA positive regulation of regulated secretory pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000018107 rab3da RAB3D, member RAS oncogene family, a protein_coding Danio_rerio
ENSDARG00000043607 rab3db RAB3D, member RAS oncogene family, b protein_coding Danio_rerio
ENSG00000105514 RAB3D RAB3D, member RAS oncogene family protein_coding Homo_sapiens

Loading