C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: syntaxin binding protein 5 (tomosyn)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000019790 Stxbp5 10090 - 10:9755547-9901079 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000038213 Stxbp5-001 9755547-9900683 protein_coding
  ENSMUST00000125200 Stxbp5-003 9760913-9900683 protein_coding
  ENSMUST00000128487 Stxbp5-009 9769603-9778309 retained_intron
  ENSMUST00000131828 Stxbp5-006 9767099-9770521 retained_intron
  ENSMUST00000136259 Stxbp5-005 9760581-9780328 retained_intron
  ENSMUST00000136324 Stxbp5-007 9769437-9798197 protein_coding
  ENSMUST00000139199 Stxbp5-010 9767209-9778309 retained_intron
  ENSMUST00000139779 Stxbp5-008 9789036-9798168 retained_intron
  ENSMUST00000141722 Stxbp5-002 9759958-9901079 protein_coding
  ENSMUST00000148009 Stxbp5-011 9767102-9768948 retained_intron
  ENSMUST00000151435 Stxbp5-004 9759996-9798037 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000038213ENSMUST00000125200ENSMUST00000131828ENSMUST00000136259ENSMUST00000139199ENSMUST00000141722ENSMUST00000151435
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000038213 0.909±0.42 2.595±0.03 1.354±0.43 1.883±1.56 0.742±0.12 0.988±0.00 0.374±0.10 0.596±0.11 0.607±0.19 1.083±0.20 0.904±0.21 1.538±0.35 1.301±0.29 N/A
ENSMUST00000125200 N/A N/A N/A 6.195±0.00 2.543±0.00 N/A N/A N/A 1.044±0.30 N/A 1.032±0.00 3.002±0.00 2.952±0.31 1.170±0.00
ENSMUST00000131828 N/A N/A N/A N/A 3.310±1.00 N/A N/A N/A N/A N/A N/A 3.273±0.00 N/A N/A
ENSMUST00000136259 1.328±0.25 4.232±1.41 1.205±0.00 1.148±0.00 1.316±0.65 2.585±0.13 0.461±0.00 1.139±0.31 0.717±0.08 2.344±0.02 N/A 3.033±0.84 N/A 1.015±0.00
ENSMUST00000139199 N/A 9.853±0.00 N/A N/A N/A 11.226±2.87 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141722 2.557±1.46 N/A 2.798±0.08 3.217±0.21 1.497±0.75 0.985±0.00 1.546±0.26 2.332±1.00 1.782±0.95 1.471±0.08 0.993±0.09 1.940±0.85 3.459±1.29 1.776±0.57
ENSMUST00000151435 2.843±0.00 N/A 2.434±0.40 N/A 2.596±1.12 N/A 1.125±0.03 2.086±0.65 1.352±0.00 2.155±0.00 N/A 1.821±0.28 N/A 1.542±0.78

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004ZZ CIL_0004ZZ_0002 CGP 10:9627259-9901079
CIL_0004J4 CIL_0004J4_0002 CGP 10:9755547-10472326

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005892 IDA acetylcholine-gated channel complex
GO:0006887 IDA exocytosis
GO:0007409 TAS axonogenesis
GO:0010468 IEA regulation of gene expression
GO:0015031 IEA protein transport
GO:0017075 IPI syntaxin-1 binding
GO:0017157 IDA regulation of exocytosis
GO:0019905 IPI syntaxin binding
GO:0030141 NAS secretory granule
GO:0030193 IEA regulation of blood coagulation
GO:0045921 IDA positive regulation of exocytosis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000002656 stxbp5a syntaxin binding protein 5a (tomosyn) protein_coding Danio_rerio
ENSDARG00000029234 stxbp5b syntaxin binding protein 5b (tomosyn) protein_coding Danio_rerio
ENSG00000164506 STXBP5 syntaxin binding protein 5 (tomosyn) protein_coding Homo_sapiens

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