C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: syntaxin binding protein 5 (tomosyn)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000141722 Stxbp5-002 ENSMUSG00000019790 10090 - 10:9759958-9901079 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000141722
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000141722 2.557±1.46 2.798±0.08 3.217±0.21 1.497±0.75 0.985±0.00 1.546±0.26 2.332±1.00 1.782±0.95 1.471±0.08 0.993±0.09 1.940±0.85 3.459±1.29 1.776±0.57

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004ZZ CIL_0004ZZ_0002 CGP 10:9627259-9901079
CIL_0004J4 CIL_0004J4_0002 CGP 10:9755547-10472326

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005892 IDA acetylcholine-gated channel complex
GO:0006887 IDA exocytosis
GO:0010468 IEA regulation of gene expression
GO:0017075 IPI syntaxin-1 binding
GO:0017157 IDA regulation of exocytosis
GO:0019905 IPI syntaxin binding
GO:0030193 IEA regulation of blood coagulation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000098731 stxbp5b-201 protein_coding Danio_rerio 0 427
ENSDART00000101762 stxbp5a-201 protein_coding Danio_rerio 0 344
ENSDART00000142806 stxbp5a-001 protein_coding Danio_rerio 0 344
ENST00000321680 STXBP5-002 protein_coding Homo_sapiens 0 2832
ENST00000367475 STXBP5-005 protein_coding Homo_sapiens 0 276
ENST00000367480 STXBP5-003 protein_coding Homo_sapiens 0 2832
ENST00000367481 STXBP5-001 protein_coding Homo_sapiens 0 4595
ENST00000392291 STXBP5-004 protein_coding Homo_sapiens 0 691
ENST00000546097 STXBP5-201 protein_coding Homo_sapiens 0 1317

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