C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Vps20-associated 1 homolog (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000019868 Vta1 10090 - 10:14654755-14705560 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000020018 Vta1-002 14655355-14705500 nonsense_mediated_decay
  ENSMUST00000133927 Vta1-004 14655839-14684093 nonsense_mediated_decay
  ENSMUST00000149485 Vta1-006 14655788-14705459 protein_coding
  ENSMUST00000151805 Vta1-003 14684881-14705465 processed_transcript
  ENSMUST00000154132 Vta1-001 14654755-14705560 protein_coding
  ENSMUST00000156398 Vta1-005 14655663-14668261 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000020018ENSMUST00000149485ENSMUST00000154132ENSMUST00000156398
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000020018 6.375±1.84 4.159±0.72 15.048±0.87 19.054±4.56 7.023±3.07 4.660±1.93 3.325±0.26 4.777±1.28 6.479±4.77 2.527±0.55 5.476±1.42 9.638±3.39 19.507±5.24 2.766±1.63
ENSMUST00000149485 N/A N/A 9.842±1.21 5.129±0.00 N/A N/A N/A N/A 8.179±2.74 N/A 3.377±0.74 6.326±1.02 11.414±3.70 1.451±0.00
ENSMUST00000154132 3.294±0.97 8.672±4.41 3.524±0.55 3.965±0.28 4.715±1.37 5.301±1.39 1.496±0.41 3.846±1.42 2.607±0.52 3.496±0.63 0.805±0.24 8.047±3.93 3.575±1.24 2.210±0.36
ENSMUST00000156398 N/A 13.524±4.33 N/A N/A 8.046±1.73 13.155±4.76 N/A 4.338±0.00 6.421±2.90 3.849±0.94 N/A 14.720±4.93 N/A 1.629±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005768 IEA endosome
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000013732 vta1 Vps20-associated 1 homolog (S. cerevisiae) protein_coding Danio_rerio
ENSG00000009844 VTA1 vesicle (multivesicular body) trafficking 1 protein_coding Homo_sapiens

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