C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: vesicle (multivesicular body) trafficking 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000009844 VTA1 9606 + 6:142147162-142224689 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000367621 VTA1-002 142147257-142219067 protein_coding
  ENST00000367630 VTA1-001 142147230-142224689 protein_coding
  ENST00000452973 VTA1-201 142147162-142220946 protein_coding
  ENST00000491881 VTA1-003 142170346-142198781 processed_transcript
  ENST00000620996 VTA1-202 142147162-142220946 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000367621ENST00000367630ENST00000452973ENST00000620996
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000367621 3.756±0.00 4.594±0.00 1.075±0.00 4.397±0.76 2.813±1.34 4.312±2.09 4.267±2.46 4.790±3.31 3.800±0.76 3.191±0.70 5.447±3.21 9.582±1.90 7.890±1.31 3.904±1.95
ENST00000367630 N/A N/A N/A 0.546±0.11 0.307±0.00 0.362±0.00 N/A 0.327±0.00 N/A N/A 0.524±0.25 N/A N/A N/A
ENST00000452973 N/A N/A N/A N/A 1.000±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000620996 3.593±0.00 N/A 1.498±0.00 3.539±2.46 2.030±0.85 2.292±0.79 2.253±1.30 4.112±1.77 2.200±1.19 2.592±0.04 2.909±1.88 7.648±2.66 4.302±0.47 3.550±1.38

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00030O CIL_00030O_0002 CGP 6:142133090-142224689
CIL_00030L CIL_00030L_0002 CGP 6:142147162-142446266

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005768 IEA endosome
GO:0005829 TAS cytosol
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0016032 TAS viral process
GO:0016197 TAS endosomal transport
GO:0019058 TAS viral life cycle
GO:0061024 TAS membrane organization
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000013732 vta1 Vps20-associated 1 homolog (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000019868 Vta1 Vps20-associated 1 homolog (S. cerevisiae) protein_coding Mus_musculus

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