C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Vps20-associated 1 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000020018 Vta1-002 ENSMUSG00000019868 10090 - 10:14655355-14705500 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000020018
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000020018 6.375±1.84 4.159±0.72 15.048±0.87 19.054±4.56 7.023±3.07 4.660±1.93 3.325±0.26 4.777±1.28 6.479±4.77 2.527±0.55 5.476±1.42 9.638±3.39 19.507±5.24 2.766±1.63

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000367621 VTA1-002 protein_coding Homo_sapiens 0 965
ENST00000367630 VTA1-001 protein_coding Homo_sapiens 0 826
ENST00000452973 VTA1-201 protein_coding Homo_sapiens 0 778
ENST00000491881 VTA1-003 processed_transcript Homo_sapiens 0 459
ENST00000620996 VTA1-202 protein_coding Homo_sapiens 0 640

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