C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: serine incorporator 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000019877 Serinc1 10090 - 10:57515774-57532530 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000020027 Serinc1-001 57515774-57532530 protein_coding
  ENSMUST00000164400 Serinc1-005 57525231-57532409 retained_intron
  ENSMUST00000166997 Serinc1-002 57525225-57532477 retained_intron
  ENSMUST00000169122 Serinc1-003 57523035-57532428 protein_coding
  ENSMUST00000170062 Serinc1-004 57523184-57532410 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000020027
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000020027 73.947±3.17 16.868±2.55 73.835±0.01 96.008±4.27 47.636±11.61 20.305±9.87 51.834±7.50 50.518±1.92 47.781±6.53 78.005±6.23 46.524±2.33 27.365±21.04 44.522±25.29 10.456±4.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005OP CIL_0005OP_0002 CGP 10:57486385-57532530
CIL_0005OO CIL_0005OO_0002 CGP 10:57515774-57741112

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005789 ISS endoplasmic reticulum membrane
GO:0005886 ISS plasma membrane
GO:0006658 ISS phosphatidylserine metabolic process
GO:0006665 ISS sphingolipid metabolic process
GO:0008654 IEA phospholipid biosynthetic process
GO:0015194 ISS L-serine transmembrane transporter activity
GO:0015825 ISS L-serine transport
GO:0016021 IEA integral component of membrane
GO:0051347 ISS positive regulation of transferase activity
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000009106 serinc1 serine incorporator 1 protein_coding Danio_rerio
ENSG00000111897 SERINC1 serine incorporator 1 protein_coding Homo_sapiens

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