C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: synaptonemal complex protein 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000020059 Sycp3 10090 + 10:88459569-88473236 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000020252 Sycp3-001 88459569-88473235 protein_coding
  ENSMUST00000123244 Sycp3-002 88459664-88473236 nonsense_mediated_decay
  ENSMUST00000125612 Sycp3-003 88459664-88473236 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; TestisENSMUST00000020252ENSMUST00000123244ENSMUST00000125612
Transcript ID Testis
ENSMUST00000020252 20.976±10.83
ENSMUST00000123244 14.854±0.00
ENSMUST00000125612 10.180±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00078K CIL_00078K_0002 CGP 10:88379132-88504073
CIL_0002S4 CIL_0002S4_0002 CGP 10:88452745-88504073

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000711 IGI meiotic DNA repair synthesis
GO:0000793 IDA condensed chromosome
GO:0000794 IDA condensed nuclear chromosome
GO:0000795 IDA synaptonemal complex
GO:0000800 IDA lateral element
GO:0000802 IDA transverse filament
GO:0001673 IDA male germ cell nucleus
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005694 IDA chromosome
GO:0007067 IDA mitotic nuclear division
GO:0007126 IDA meiotic nuclear division
GO:0007129 IMP synapsis
GO:0007130 IGI synaptonemal complex assembly
GO:0007283 IGI spermatogenesis
GO:0035092 IGI sperm chromatin condensation
GO:0046982 IPI protein heterodimerization activity
GO:0051026 IGI chiasma assembly
GO:0051878 IGI lateral element assembly

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000013438 sycp3 synaptonemal complex protein 3 protein_coding Danio_rerio
ENSG00000139351 SYCP3 synaptonemal complex protein 3 protein_coding Homo_sapiens

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