C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: synaptonemal complex protein 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000139351 SYCP3 9606 - 12:101728648-101739472 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000266743 SYCP3-002 101728648-101739426 protein_coding
  ENST00000392924 SYCP3-003 101728873-101739413 protein_coding
  ENST00000392927 SYCP3-001 101728650-101739469 protein_coding
  ENST00000478139 SYCP3-004 101728648-101739472 retained_intron
  ENST00000478238 SYCP3-005 101728648-101731666 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyOvaryTestisENST00000392924ENST00000392927ENST00000478139ENST00000478238
Transcript ID Adrenal Brain Breast Colon Heart Kidney Ovary Testis
ENST00000392924 N/A N/A N/A N/A N/A N/A N/A 27.215±0.50
ENST00000392927 N/A N/A N/A N/A N/A N/A N/A 20.994±0.00
ENST00000478139 N/A N/A N/A 0.608±0.00 0.510±0.00 N/A N/A N/A
ENST00000478238 6.710±0.00 4.773±0.00 6.116±0.00 8.912±0.00 N/A 10.966±0.00 4.267±0.00 19.910±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002S4 CIL_0002S4_0001 CGP 12:101696947-101744140

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IDA nucleus
GO:0005694 IEA chromosome
GO:0007141 NAS male meiosis I
GO:0035093 IMP spermatogenesis, exchange of chromosomal proteins

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000013438 sycp3 synaptonemal complex protein 3 protein_coding Danio_rerio
ENSMUSG00000020059 Sycp3 synaptonemal complex protein 3 protein_coding Mus_musculus
ENSMUSG00000031125 3830403N18Rik RIKEN cDNA 3830403N18 gene protein_coding Mus_musculus
ENSMUSG00000054626 Xlr X-linked lymphocyte-regulated protein_coding Mus_musculus
ENSMUSG00000054727 1700013H16Rik RIKEN cDNA 1700013H16 gene protein_coding Mus_musculus
ENSMUSG00000073177 Gm773 predicted gene 773 protein_coding Mus_musculus
ENSMUSG00000093895 Gm21865 predicted gene, 21865 protein_coding Mus_musculus
ENSMUSG00000093993 Gm20736 predicted gene, 20736 protein_coding Mus_musculus
ENSMUSG00000094170 Gm21170 predicted gene, 21170 protein_coding Mus_musculus
ENSMUSG00000094181 Gm21739 predicted gene, 21739 protein_coding Mus_musculus
ENSMUSG00000094399 Gm21477 predicted gene, 21477 protein_coding Mus_musculus
ENSMUSG00000094570 Gm20931 predicted gene, 20931 protein_coding Mus_musculus
ENSMUSG00000094616 Gm20888 predicted gene, 20888 protein_coding Mus_musculus
ENSMUSG00000094647 Gm21650 predicted gene, 21650 protein_coding Mus_musculus
ENSMUSG00000094746 Gm20916 predicted gene, 20916 protein_coding Mus_musculus
ENSMUSG00000094782 Gm21256 predicted gene, 21256 protein_coding Mus_musculus
ENSMUSG00000094789 1700040F15Rik predicted gene 28490 protein_coding Mus_musculus
ENSMUSG00000094821 Gm21518 predicted gene, 21518 protein_coding Mus_musculus
ENSMUSG00000094869 Gm21679 predicted gene, 21679 protein_coding Mus_musculus
ENSMUSG00000095011 Gm20838 predicted gene, 20838 protein_coding Mus_musculus
ENSMUSG00000095135 Gm21858 predicted gene, 21858 protein_coding Mus_musculus
ENSMUSG00000095141 1700040F15Rik predicted gene 28891 protein_coding Mus_musculus
ENSMUSG00000095153 Gm21095 predicted gene, 21095 protein_coding Mus_musculus
ENSMUSG00000095263 Gm21094 predicted gene, 21094 protein_coding Mus_musculus
ENSMUSG00000095578 Gm21760 predicted gene, 21760 protein_coding Mus_musculus
ENSMUSG00000095606 Gm21258 predicted gene, 21258 protein_coding Mus_musculus
ENSMUSG00000095793 Gm20855 predicted gene, 20855 protein_coding Mus_musculus
ENSMUSG00000095979 Gm21209 predicted gene, 21209 protein_coding Mus_musculus
ENSMUSG00000096016 Gm20937 predicted gene, 20937 protein_coding Mus_musculus
ENSMUSG00000096178 Gm20837 predicted gene, 20837 protein_coding Mus_musculus
ENSMUSG00000096626 Gm21861 predicted gene, 21861 protein_coding Mus_musculus
ENSMUSG00000096650 Gm20896 predicted gene, 20896 protein_coding Mus_musculus
ENSMUSG00000096769 Gm21117 predicted gene, 21117 protein_coding Mus_musculus
ENSMUSG00000096902 Gm20843 predicted gene, 20843 protein_coding Mus_musculus
ENSMUSG00000099531 SLY predicted gene, 20869 protein_coding Mus_musculus
ENSMUSG00000099541 RP24-553N23.1 predicted gene, 21488 protein_coding Mus_musculus
ENSMUSG00000099740 RP24-75L3.1 predicted gene 28897 protein_coding Mus_musculus
ENSMUSG00000099782 SLY predicted gene, 20903 protein_coding Mus_musculus
ENSMUSG00000099792 CH36-100J11.2 predicted gene 29564 protein_coding Mus_musculus
ENSMUSG00000099840 SLY predicted gene, 21409 protein_coding Mus_musculus
ENSMUSG00000099856 SLY predicted gene, 20906 protein_coding Mus_musculus
ENSMUSG00000099894 RP24-120M11.1 predicted gene, 20911 protein_coding Mus_musculus
ENSMUSG00000099925 RP24-269G16.1 predicted gene 28827 protein_coding Mus_musculus
ENSMUSG00000100032 RP24-116I9.1 predicted gene, 20817 protein_coding Mus_musculus
ENSMUSG00000100045 SLY predicted gene, 20929 protein_coding Mus_musculus
ENSMUSG00000100055 RP24-439E13.1 predicted gene, 20890 protein_coding Mus_musculus
ENSMUSG00000100231 RP24-91H16.1 predicted gene 29554 protein_coding Mus_musculus
ENSMUSG00000100240 RP24-145C1.1 predicted gene, 20820 protein_coding Mus_musculus
ENSMUSG00000100338 RP24-339P22.1 pseudogene Mus_musculus
ENSMUSG00000100467 RP24-195K22.1 predicted gene 29582 protein_coding Mus_musculus
ENSMUSG00000100485 SLY predicted gene, 20920 protein_coding Mus_musculus
ENSMUSG00000100535 SLY predicted gene, 20870 protein_coding Mus_musculus
ENSMUSG00000100608 CH36-8M21.1 predicted gene 21996 protein_coding Mus_musculus
ENSMUSG00000100645 RP24-81F10.2 predicted gene 28576 protein_coding Mus_musculus
ENSMUSG00000100667 RP24-362J19.1 predicted gene, 21563 protein_coding Mus_musculus
ENSMUSG00000100708 RP24-317N4.6 predicted gene, 21173 protein_coding Mus_musculus
ENSMUSG00000100726 RP24-391A22.5 predicted gene, 21497 protein_coding Mus_musculus
ENSMUSG00000100856 SLY predicted gene, 21627 protein_coding Mus_musculus
ENSMUSG00000100892 SLY predicted gene, 20897 protein_coding Mus_musculus
ENSMUSG00000100902 SLY predicted gene, 20850 protein_coding Mus_musculus
ENSMUSG00000100939 CH36-125L12.1 predicted gene 28998 protein_coding Mus_musculus
ENSMUSG00000100972 CH36-30F23.2 predicted gene 28553 protein_coding Mus_musculus
ENSMUSG00000101146 SLY predicted gene, 20814 protein_coding Mus_musculus
ENSMUSG00000101155 Sly Sycp3 like Y-linked protein_coding Mus_musculus
ENSMUSG00000101157 SLY predicted gene, 20905 protein_coding Mus_musculus
ENSMUSG00000101158 SLY predicted gene, 20894 protein_coding Mus_musculus
ENSMUSG00000101243 RP24-152N3.3 predicted gene 28919 protein_coding Mus_musculus
ENSMUSG00000101286 SLY predicted gene, 21317 protein_coding Mus_musculus
ENSMUSG00000101396 CH36-373B9.1 predicted gene 28510 protein_coding Mus_musculus
ENSMUSG00000101399 RP24-167E2.2 predicted gene 28961 protein_coding Mus_musculus
ENSMUSG00000101471 RP24-323J22.1 predicted gene 29276 protein_coding Mus_musculus
ENSMUSG00000101528 RP24-79A15.1 predicted gene 29110 protein_coding Mus_musculus
ENSMUSG00000101653 RP24-168C11.1 predicted gene, 20792 protein_coding Mus_musculus
ENSMUSG00000101766 SLY predicted gene, 20908 protein_coding Mus_musculus
ENSMUSG00000101915 RP24-83L22.3 predicted gene 28102 protein_coding Mus_musculus
ENSMUSG00000101928 CH36-246D16.3 predicted gene, 20824 protein_coding Mus_musculus
ENSMUSG00000101933 SLY predicted gene, 20835 protein_coding Mus_musculus
ENSMUSG00000102045 CH36-205C2.2 predicted gene, 21294 protein_coding Mus_musculus
ENSMUSG00000102122 SLY predicted gene, 20883 protein_coding Mus_musculus

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