C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptonemal complex protein 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000123244 Sycp3-002 ENSMUSG00000020059 10090 + 10:88459664-88473236 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; TestisENSMUST00000123244
Transcript ID Testis
ENSMUST00000123244 14.854±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00078K CIL_00078K_0002 CGP 10:88379132-88504073
CIL_0002S4 CIL_0002S4_0002 CGP 10:88452745-88504073

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000711 IGI meiotic DNA repair synthesis
GO:0000793 IDA condensed chromosome
GO:0000794 IDA condensed nuclear chromosome
GO:0000795 IDA synaptonemal complex
GO:0000800 IDA lateral element
GO:0000802 IDA transverse filament
GO:0001673 IDA male germ cell nucleus
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005694 IDA chromosome
GO:0007067 IDA mitotic nuclear division
GO:0007126 IDA meiotic nuclear division
GO:0007129 IMP synapsis
GO:0007130 IGI synaptonemal complex assembly
GO:0007283 IGI spermatogenesis
GO:0035092 IGI sperm chromatin condensation
GO:0046982 IPI protein heterodimerization activity
GO:0051026 IGI chiasma assembly
GO:0051878 IGI lateral element assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000229266 CHPT1-001 protein_coding Homo_sapiens 5e-28 130
ENST00000266743 SYCP3-002 protein_coding Homo_sapiens 0 518
ENST00000392924 SYCP3-003 protein_coding Homo_sapiens 0 499
ENST00000392927 SYCP3-001 protein_coding Homo_sapiens 0 518
ENST00000478139 SYCP3-004 retained_intron Homo_sapiens 0 429
ENST00000478238 SYCP3-005 retained_intron Homo_sapiens 2.00386e-43 180
ENST00000549128 CHPT1-004 nonsense_mediated_decay Homo_sapiens 5e-23 113
ENST00000552215 CHPT1-005 nonsense_mediated_decay Homo_sapiens 1.00053e-42 180
ENST00000552351 CHPT1-003 nonsense_mediated_decay Homo_sapiens 4e-28 130

Loading