C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002S4_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000111666-ENSG00000111666 CGP 9606 12:101696947-101744140
GeneTranscriptPositionBiotype
ENSG00000111666 (CHPT1)
choline phosphotransferase 1 		ENST00000229266 (CHPT1-001) 101697627-101729074 protein_coding
ENST00000546490 (CHPT1-007) 101697854-101714284 retained_intron
ENST00000546873 (CHPT1-009) 101726323-101744140 nonsense_mediated_decay
ENST00000549128 (CHPT1-004) 101697692-101729016 nonsense_mediated_decay
ENST00000549872 (CHPT1-002) 101697672-101727039 protein_coding
ENST00000550385 (CHPT1-006) 101696947-101720226 processed_transcript
ENST00000552213 (CHPT1-010) 101739578-101744010 processed_transcript
ENST00000552215 (CHPT1-005) 101697965-101729646 nonsense_mediated_decay
ENST00000552329 (CHPT1-008) 101714528-101723254 nonsense_mediated_decay
ENST00000552351 (CHPT1-003) 101697692-101729051 nonsense_mediated_decay
ENSG00000199933 (RNY1P16)
RNA, Ro-associated Y1 pseudogene 16 		ENST00000363063 (RNY1P16-201) 101719808-101719918 misc_RNA
CIL_0002S4_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000060002-ENSMUSG00000060002 CGP 10090 10:88452745-88504073
GeneTranscriptPositionBiotype
ENSMUSG00000020059 (Sycp3)
synaptonemal complex protein 3 		ENSMUST00000020252 (Sycp3-001) 88459569-88473235 protein_coding
ENSMUST00000123244 (Sycp3-002) 88459664-88473236 nonsense_mediated_decay
ENSMUST00000125612 (Sycp3-003) 88459664-88473236 protein_coding
ENSMUSG00000060002 (Chpt1)
choline phosphotransferase 1 		ENSMUST00000020253 (Chpt1-001) 88472817-88503970 protein_coding
ENSMUST00000073783 (Chpt1-006) 88487042-88503925 protein_coding
ENSMUST00000117440 (Chpt1-004) 88469514-88504073 protein_coding
ENSMUST00000117579 (Chpt1-007) 88485593-88503918 protein_coding
ENSMUST00000126074 (Chpt1-005) 88472419-88503999 nonsense_mediated_decay
ENSMUST00000134318 (Chpt1-008) 88453004-88480872 protein_coding
ENSMUST00000139109 (Chpt1-003) 88472839-88503889 nonsense_mediated_decay
ENSMUST00000143108 (Chpt1-002) 88472817-88503753 nonsense_mediated_decay
ENSMUST00000148899 (Chpt1-009) 88452745-88476440 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002S4_0001ENSG00000111666ENST00000229266ENST00000546490ENST00000546873ENST00000549128ENST00000549872ENST00000550385ENST00000552213ENST00000552215ENST00000552329ENST00000552351ENSG00000199933ENST00000363063CIL_0002S4_0002ENSMUSG00000020059ENSMUST00000020252ENSMUST00000123244ENSMUST00000125612ENSMUSG00000060002ENSMUST00000020253ENSMUST00000073783ENSMUST00000117440ENSMUST00000117579ENSMUST00000126074ENSMUST00000134318ENSMUST00000139109ENSMUST00000143108ENSMUST00000148899
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002S4_0001ENSG00000111666ENST00000229266ENST00000549128ENST00000549872ENST00000552215ENST00000552329ENST00000552351ENSG00000199933ENST00000363063CIL_0002S4_0002ENSMUSG00000020059ENSMUST00000020252ENSMUST00000123244ENSMUST00000125612ENSMUSG00000060002ENSMUST00000020253ENSMUST00000073783ENSMUST00000117440ENSMUST00000139109ENSMUST00000143108
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000111666 ENST00000229266 35.265±0.00 6.544±0.00 4.340±0.00 6.187±1.92 7.487±0.00 6.967±3.13 22.125±14.88 21.273±4.08 15.169±9.41 10.023±5.51 N/A 15.340±3.01 15.288±3.08 17.220±0.00
ENST00000546490 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000546873 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000549128 15.363±0.00 11.424±0.00 N/A 13.230±0.00 12.500±0.00 26.497±0.00 24.889±0.00 N/A 12.713±9.28 13.006±10.88 4.288±1.10 6.958±0.12 3.016±0.00 43.960±6.78
ENST00000549872 N/A N/A N/A 1.927±0.00 3.162±0.00 4.012±0.56 1.869±0.00 4.706±0.00 N/A 2.123±0.00 N/A 2.945±0.00 2.812±1.26 N/A
ENST00000550385 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552213 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552215 N/A 1.158±0.00 1.395±0.00 0.981±0.00 N/A 1.294±0.00 0.784±0.00 1.983±0.00 0.993±0.00 1.222±0.00 N/A 0.478±0.00 N/A N/A
ENST00000552329 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.177±0.00 N/A N/A
ENST00000552351 N/A 6.537±0.00 N/A 4.206±0.00 13.400±0.00 N/A N/A N/A N/A N/A 6.125±0.00 N/A N/A N/A
ENSG00000199933 ENST00000363063 N/A 1.022±0.00 22.833±0.00 N/A 0.332±0.00 N/A 15.094±0.00 0.162±0.00 N/A 0.281±0.00 N/A 1.250±0.38 N/A 1.329±1.18
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000020059 ENSMUST00000020252 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 20.976±10.83
ENSMUST00000123244 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 14.854±0.00
ENSMUST00000125612 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.180±0.00
ENSMUSG00000060002 ENSMUST00000020253 N/A N/A 6.108±1.30 0.312±0.00 8.125±0.00 N/A 9.204±1.23 27.975±0.74 0.394±0.07 N/A 8.315±0.89 11.185±4.94 2.799±1.07 N/A
ENSMUST00000073783 214.628±124.82 275.700±152.19 N/A N/A 203.537±50.90 42.904±6.62 64.065±27.68 190.713±45.09 23.040±10.48 40.404±13.28 N/A 51.136±8.27 N/A 18.878±3.59
ENSMUST00000117440 N/A N/A 3.937±0.86 1.337±1.42 N/A N/A 3.756±0.00 N/A 0.160±0.03 N/A 5.144±0.41 4.782±0.76 1.058±0.29 N/A
ENSMUST00000117579 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000126074 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134318 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139109 178.228±94.31 123.134±44.96 12.311±0.18 1.251±0.29 78.077±4.55 7.327±1.37 50.156±4.91 105.607±16.80 13.247±14.93 24.638±5.06 28.918±1.35 16.195±10.47 15.897±10.36 31.283±6.65
ENSMUST00000143108 N/A N/A N/A 0.609±0.16 N/A N/A N/A N/A 1.750±1.46 N/A N/A 2.532±0.00 4.614±0.91 N/A
ENSMUST00000148899 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Loading