C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: pescadillo homolog 1, containing BRCT domain (zebrafish)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000020430 Pes1 10090 + 11:3963975-3980004 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000020705 Pes1-201 3963975-3980004 protein_coding
  ENSMUST00000109985 Pes1-001 3963975-3980004 protein_coding
  ENSMUST00000130973 Pes1-003 3964009-3970835 processed_transcript
  ENSMUST00000137544 Pes1-002 3964049-3976884 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000020705ENSMUST00000137544
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000020705 22.334±5.50 31.357±3.17 16.642±0.37 17.317±8.11 24.450±2.39 19.978±2.20 8.624±0.98 13.111±3.66 12.597±7.82 14.713±4.86 5.498±1.28 31.432±6.18 26.843±7.15 14.236±1.68
ENSMUST00000137544 N/A N/A N/A 4.430±0.00 N/A N/A N/A N/A N/A N/A N/A 16.649±4.19 21.108±7.68 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006F8 CIL_0006F8_0002 CGP 11:3963975-3999326

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000463 ISS maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000466 ISS maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000793 IDA condensed chromosome
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 ISS nucleoplasm
GO:0005730 ISS nucleolus
GO:0005737 IEA cytoplasm
GO:0006364 IGI rRNA processing
GO:0007000 IMP nucleolus organization
GO:0008283 ISS cell proliferation
GO:0016020 IEA membrane
GO:0030687 ISS preribosome, large subunit precursor
GO:0033365 IMP protein localization to organelle
GO:0042254 IMP ribosome biogenesis
GO:0043021 IEA ribonucleoprotein complex binding
GO:0044822 IEA poly(A) RNA binding
GO:0051726 IEA regulation of cell cycle
GO:0070545 ISS PeBoW complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000018902 pes pescadillo protein_coding Danio_rerio
ENSG00000100029 PES1 pescadillo ribosomal biogenesis factor 1 protein_coding Homo_sapiens

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