C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: pescadillo ribosomal biogenesis factor 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000100029 PES1 9606 - 22:30576625-30607083 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000335214 PES1-005 30576835-30591858 protein_coding
  ENST00000354694 PES1-001 30576625-30591940 protein_coding
  ENST00000402281 PES1-003 30576628-30607083 protein_coding
  ENST00000402284 PES1-004 30576665-30591880 protein_coding
  ENST00000405677 PES1-002 30576632-30606988 protein_coding
  ENST00000406208 PES1-010 30581334-30591866 nonsense_mediated_decay
  ENST00000433575 PES1-009 30585224-30591878 processed_transcript
  ENST00000441668 PES1-013 30576630-30579923 protein_coding
  ENST00000466614 PES1-008 30586998-30591890 retained_intron
  ENST00000467368 PES1-012 30603778-30606869 processed_transcript
  ENST00000477762 PES1-011 30584227-30588023 retained_intron
  ENST00000488719 PES1-006 30576636-30580074 retained_intron
  ENST00000492986 PES1-007 30603780-30607058 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000335214ENST00000354694ENST00000402284ENST00000405677ENST00000433575ENST00000441668ENST00000466614
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000335214 N/A 9.251±0.00 N/A 4.179±2.77 N/A N/A 2.404±1.85 19.413±0.00 11.088±0.00 N/A 16.475±0.00 7.649±6.49 N/A 9.654±0.00
ENST00000354694 N/A N/A N/A 2.456±0.00 N/A 4.273±2.57 4.019±0.00 2.906±0.00 3.437±0.43 N/A 13.720±0.00 19.345±13.88 16.858±7.99 9.969±0.00
ENST00000402284 15.341±0.00 19.557±0.00 N/A 4.074±2.44 7.245±5.51 8.480±7.62 N/A N/A 2.893±1.25 8.060±0.00 6.028±0.00 13.888±0.00 9.063±0.00 16.576±2.73
ENST00000405677 N/A N/A 0.783±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000433575 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.673±0.00 N/A N/A
ENST00000441668 N/A 21.975±0.00 N/A 12.322±0.00 16.216±0.00 N/A N/A N/A N/A N/A 0.549±0.00 N/A N/A 21.188±0.00
ENST00000466614 N/A N/A N/A N/A N/A 2.430±0.00 N/A N/A N/A 2.491±0.00 N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000463 IMP maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000466 IMP maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000793 IEA condensed chromosome
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005654 IDA nucleoplasm
GO:0005694 IEA chromosome
GO:0005730 IDA:IEA nucleolus
GO:0005737 IDA cytoplasm
GO:0006364 IMP rRNA processing
GO:0007000 IEA nucleolus organization
GO:0008283 NAS cell proliferation
GO:0016020 IDA membrane
GO:0030687 IDA preribosome, large subunit precursor
GO:0033365 IEA protein localization to organelle
GO:0042254 IEA ribosome biogenesis
GO:0042273 IC ribosomal large subunit biogenesis
GO:0043021 IEA ribonucleoprotein complex binding
GO:0044822 IDA poly(A) RNA binding
GO:0051726 IMP regulation of cell cycle
GO:0070545 IDA PeBoW complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000018902 pes pescadillo protein_coding Danio_rerio
ENSMUSG00000020430 Pes1 pescadillo homolog 1, containing BRCT domain (zebrafish) protein_coding Mus_musculus

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